FastQCFastQC Report
Fri 26 Apr 2024
SAMPLE1_PE_2.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSAMPLE1_PE_2.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences27721
Sequences flagged as poor quality0
Sequence length35-301
%GC38

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CGACTACTAGCGTGCCTTTGTAAGCACAAGCTGATGAGTACGAACTTATG4831.7423613866743621No Hit
CTTTTCTCCAAGCAGGGTTACGTGTAAGGAATTCTCTTACCACGCCTATT4581.652177049889975No Hit
ACTAGGTTCCATTGTTCAAGGAGCTTTTTAAGCTCTTCAACGGTAATAGT4511.6269254355903466No Hit
ACTACCGAAGTTGTAGGAGACATTATACTTAAACCAGCAAATAATAGTTT4451.6052811947620937No Hit
TGATTTGAGTGTTGTCAATGCCAGATTACGTGCTAAGCACTATGTGTACA4371.5764222069910898No Hit
ACAGTATTCTTTGCTATAGTAGTCGGCATAGATGCTTTAATTCTAGAATT4201.5150968579777064No Hit
AGCCTCATAAAACTCAGGTTCCCAATACCTTGAAGTGTTATCATTAGTAA4001.4429493885501967No Hit
TGAAATGGTGAATTGCCCTCGTATGTTCCAGAAGAGCAAGGTTCTTTTAA3991.439342015078821No Hit
CATCCAGATTCTGCCACTCTTGTTAGTGACATTGACATCACTTTCTTAAA3811.3744092925940623No Hit
AAGGTGTCTGCAATTCATAGCTCTTTTCAGAACGTTCCGTGTACCAAGCA3601.2986544496951768No Hit
AGCAAAATGTTGGACTGAGACTGACCTTACTAAAGGACCTCATGAATTTT3541.277010208866924No Hit
GTACGCGTTCCATGTGGTCATTCAATCCAGAAACTAACATTCTTCTCAAC3411.2301143537390427No Hit
CTCCTTTATCAGAACCAGCACCAAAATGTATAACTCTCATATTATAGGGT3181.1471447638974064No Hit
ACACAGACCATTCCAGTAGCAGTGACAATATTGCTTTGCTTGTACAGTAA3021.0894267883553985No Hit
CACAAGTAGTGGCACCTTCTTTAGTCAAATTCTCAGTGCCACAAAATTCG3021.0894267883553985No Hit
GGTGTATACTGCTGCCGTGAACATGAGCATGAAATTGCTTGGTACACGGA3001.0822120414126473No Hit
CGGTAATAAAGGAGCTGGTGGCCATAGTTACGGCGCCGATCTAAAGTCAT2971.0713899209985212No Hit
AGTTTCCACACAGACAGGCATTAATTTGCGTGTTTCTTCTGCATGTGCAA2961.0677825475271454No Hit
ACCTGAAAGTCAACGAGATGAAACATCTGTTGTCACTTACTGTACAAGCA2871.0353161862847662No Hit
AGGAATTACTTGTGTATGCTGCTGACCCTGCTATGCACGCTGCTTCTGGT2760.9956350780996357No Hit
ACACGTGGTGTTTATTACCCTGACAAAGTTTTCAGATCCTCAGTTTTACA2720.9812055842141337No Hit
TGACGATGACTTGGTTAGCATTAATACAGCCACCATCGTAACAATCAAAG2710.9775982107427581No Hit
AGTGAAATTGGGCCTCATAGCACATTGGTAAACACCAGATGGTGAACCAT2690.9703834638000073No Hit
TAACATGTTGTGCCAACCACCATAGAATTTGCTTGTTCCAATTACTACAG2690.9703834638000073No Hit
GTTGATAAGTACTTTGATTGTTACGATGGTGGCTGTATTAATGCTAACCA2580.9307023556148769No Hit
ACTCTGAACTCACTTTCCATCCAACTTTTGTTGTTTTTGTGGTAATAAAC2580.9307023556148769No Hit
TCCCATCTGGTAAAGTTGAGGGTTGTATGGTACAAGTAACTTGTGGTACA2550.9198802352007504No Hit
CCAGCAACTGTTTGTGGACCTAAAAAGTCTACTAATTTGGTTAAAAACAA2450.8838065004869954No Hit
AATAACGGTCAAAGAGTTTTAACCTCTCTTCCGTGAAGTCATATTTTAAC2320.836910645359114No Hit
TCACGCATGATGTTTCATCTGCAATTAACAGGCCACAAATAGGCGTGGTA2290.8260885249449875No Hit
CACAACTTGCGTGTGGAGGTTAATGTTGTCTACTGTTGTAAACACCTTAA2230.8044442841167346No Hit
ACTGTAGTGACAAGTCTCTCGCAACTTCATCACTAATAAATGTACTACCA2150.7755852963457307No Hit
AAGAGTCCTGTTACATTTTCAGCTTGTAAAGTTGCCACATTCCTACGTGG2150.7755852963457307No Hit
AGGTCTTCCTTGCCATGTTGAGTGAGAGCGGTGAACCAAGACGCAGTATT2040.7359041881606003No Hit
ACAGGTTCATCTAAGTGTGTGTGTTCTGTTATTGATTTATTACTTGATGA2010.7250820677464738No Hit
CACCAGCTGTCCAACCTGAAGAAGAATCACCAGGAGTCAAATAACTTCTA1960.7070452003895963No Hit
AGGACTGGTATGATTTTGTAGAAAACCCAGATATATTACGCGTATACGCC1790.645719851376213No Hit
CATCAGGAGATGCCACAACTGCTTATGCTAATAGTGTTTTTAACATTTGT1760.6348977309620865No Hit
TGAGGCTGGTTCTAAATCACCCATTCAGTACATCGATATCGGTAATTATA1740.6276829840193355No Hit
GTTGAGAGCAAAATTCATGAGGTCCTTTAGTAAGGTCAGTCTCAGTCCAA1730.62407561054796No Hit
GCAATTGTTTTTCAGCTATTTTGCAGTACATTTTATTAGTAATTCTTGGC1720.6204682370765846No Hit
TCATCAGATTCAACTTGCATGGCATTGTTAGTAGCCTTATTTAAGGCTCC1700.6132534901338336No Hit
TGCACATCAGTAGTCTTACTCTCAGTTTTGCAACAACTCAGAGTAGAATC1660.5988239962483316No Hit
AATACAAGCACCAAGGTCACGGGGTGTCATGTTTTCAACTTTGTTATAGG1520.5483207676490748No Hit
CAGCCCCTATTAAACAGCCTGCACGTGTTTGAAAAACATTAGAACCTGTA1490.5374986472349482No Hit
GCACAACTAATGGTGACTTTTTGCATTTCTTACCTAGAGTTTTTAGTGCA1450.5230691533494463No Hit
GTTGTCCAACAATTACCTGAAACTTACTTTACTCAGAGTAGAAATTTACA1430.5158544064066953No Hit
CAGTACGTTTTTGCCGAGGCTTCTTAGAAGCCTCAGCAGCAGATTTCTTA1420.5122470329353198No Hit
TGAGGGAGCCTTGAATACACCAAAAGATCACATTGGCACCCGCAATCCTG1370.49421016557844233No Hit
ACTACAGTCAGCTTATGTGTCAACCTATACTGTTACTAGATCAGGCATTA1350.48699541863569135No Hit
ACCACTAGTAGATACACAAACACCAGCTTCTGATCTTTCACAAGTGCCGT1350.48699541863569135No Hit
CAACCTTAGAAACTACAGATAAATCTTGGGATTTTATTATTTCAACAAAA1280.4617438043360629No Hit
TAGATTACCAGAAGCAGCGTGCATAGCAGGGTCAGCAGCATACACAAGTA1280.4617438043360629No Hit
TAGGCTCTGTTGGTGGGAATGTTTTGTATGCGTCAATATGCTTATTCAGC1280.4617438043360629No Hit
GTTGAACCTTTCTACAAGCCGCATTAATCTTCAGTTCATCACCAATTATA1260.45452905739331195No Hit
TGTTGACACTGACTTAACAAAGCCTTACATTAAGTGGGATTTGTTAAAAT1260.45452905739331195No Hit
AGAGTCCAACCAACAGAATCTATTGTTAGATTTCCTAATATTACAAACTT1250.45092168392193643No Hit
ACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACTTTAA1210.43649219003643447No Hit
AACCAAAAACTTGTCCATTAGCACACAATGGAAAACTAATGGGTGGTTTA1200.432884816565059No Hit
CATCTTTAAGATGTTGACGTGCCTCTGATAAGACCTCCTCCACGGAGTCT1200.432884816565059No Hit
CACGTTCACCTAAGTTGGCGTATACGCGTAATATATCTGGGTTTTCTACA1190.4292774430936835No Hit
AATTTGGAAGAAGCTGCTCGGTATATGAGATCTCTCAAAGTGCCAGCTAC1190.4292774430936835No Hit
GGAATTTGGTGCCACTTCTGCTGCTCTTCAACCTGAAGAAGAGCAAGAAG1170.4220626961509325No Hit
CCATGGCAGATTCCAACGGTACTATTACCGTTGAAGAGCTTAAAAAGCTC1170.4220626961509325No Hit
TGTCGCTTCCAAGAAAAGGACGAAGATGACAATTTAATTGATTCTTACTT1170.4220626961509325No Hit
ACACTATGCGAGCAGAAGGGTAGTAGAGAGCTAGGCCAATAGCAAAATGA1130.4076332022654306No Hit
CATGGCTGCATCACGGTCAAATTCAGATTTAGCCACATTCAAAGACTTCT1110.4004184553226795No Hit
TGATAGAGACCTTTATGACAAGTTGCAATTTACAAGTCTTGAAATTCCAC1110.4004184553226795No Hit
GTTCCCTTCCATCATATGCAGCTTTTGCTACTGCTCAAGAAGCTTATGAG1070.3859889614371776No Hit
TGGACAGTAAACTACGTCATCAAGCCAAAGACCGTTAAGTGTAGTTGTAC1050.3787742144944266No Hit
CAATTTTGTAATGATCCATTTTTGGGTGTTTATTACCACAAAAACAACAA1010.36434472060892464No Hit
TTTGTGCTTTTTAGCCTTTCTGCTATTCCTTGTTTTAATTATGCTTATTA1000.3607373471375492No Hit
AGGTGTGAGTAAACTGTTACAAACAACAACAGCAAGTTGCAAACAAAGTG990.35712997366617366No Hit
GTCCACACTCTCCTAGCACCATCATCATACACAGTTCTTGCTGTCATAAG930.3354857328379207No Hit
AGGTTCCTGGCAATTAATTGTAAAAGGTAAACAGGAAACTGTATAATTAC930.3354857328379207No Hit
TTCTGAGTACTGTAGGCACGGCACTTGTGAAAGATCAGAAGCTGGTGTTT920.33187835936654525No Hit
TGGTCAGAATAGTGCCATGGAGTGGCACGTTGAGAAGAATGTTAGTTTCT920.33187835936654525No Hit
GGCACATGGCTTTGAGTTGACATCTATGAAGTATTTTGTGAAAATAGGAC920.33187835936654525No Hit
GCCAACAACAACAAGGCCAAACTGTCACTAAGAAATCTGCTGCTGAGGCT900.3246636124237942No Hit
TGTCCAACTTAGGGTCAATTTCTGTACAAACAACACCATCCAATTTATAA890.32105623895241875No Hit
ACCTAGACCACCACTTAACCGAAATTATGTCTTTACTGGTTATCGTGTAA880.31744886548104323No Hit
TGCCACAGTACGTCTACAAGCTGGTAATGCAACAGAAGTGCCTGCCAATT880.31744886548104323No Hit
AACCTTTCCACATACCGCAGACGGTACAGACTGTGTTTTTAAGTGTAAAA860.3102341185382923No Hit
ACTTGTGTTCCTTTTTGTTGCTGCATTCAGTTGAATCACCACAAATGTAC860.3102341185382923No Hit
TGGTATGACAACCATTAGTTTGGCTGCTGTTGTAAGAGGTATTATGTTCA840.3030193715955413No Hit
ACAAACTGCCACCATCACAACCAGGCAAGTTAAGGTTAGATAGCACTCTA840.3030193715955413No Hit
GCTGTTATGTACATGGGCACACTTTCTTATGAACAATTTAAGAAAGGTGT820.2958046246527903No Hit
TCAATAGCCGCCACTAGAGGAGCTACTGTAGTAATTGGAACAAGCAAATT800.2885898777100393No Hit
AGCAGCATCTACAGCAAAAGCACAGAAAGATAATACAGTTGAATTGGCAG780.2813751307672884No Hit
GTAATTGAGCAGGGTCGCCAATGTACACATAGTGCTTAGCACGTAATCTG760.2741603838245374No Hit
ACCAGTACAGTAGGTTGCAATAGTGACATTAGTAGAGTTCAAATAGCCTT760.2741603838245374No Hit
AGGCATGCCTTCTTACTGTACTGGTTACAGAGAAGGCTATTTGAACTCTA750.2705530103531618No Hit
TGCTGTAGTTGTCTCAAGGGCTGTTGTTCTTGTGGATCCTGCTGCAAATT730.2633382634104109No Hit
TCTTTATAGCCACGGAACCTCCAAGAGCTAGCTTTTGTTGTATAAACCCA720.25973088993903537No Hit
ACCACCAACCTTAGAATCAAGATTGTTAGAATTCCAAGCTATAACGCAGC700.2525161429962844No Hit
CCTACCTCCCTTTGTTGTGTTGTAGTAAGCTAACGCATTGTCATCAGTGC700.2525161429962844No Hit
CTTCTTTCTTTGAGAGAAGTGAGGACTTGTTCTTACCTTTCTTTTCCAAT690.24890876952490892No Hit
GCTTCAACAGCTTCACTAGTAGGTTGTTCTAATGGTTGTAAATCACCAGT690.24890876952490892No Hit
ACTCAACTTTACTTAGGAGGTATGAGCTATTATTGTAAATCACATAAACC680.24530139605353343No Hit
TGTCGCAAAATATACTCAACTGTGTCAATATTTAAACACATTAACATTAG680.24530139605353343No Hit
TGTTAAGCGTGTTGACTGGACTATTGAATATCCTATAATTGGTGATGAAC670.2416940225821579No Hit
ACATTCTAACCATAGCTGAAATCGGGGCCATTTGTACAAGATTAATTATT650.23447927563940693No Hit
TGAGTTAACAGGACACATGTTAGACATGTATTCTGTTATGCTTACTAATG640.23087190216803144No Hit
TGCAAGAGATGGTTGTGTTCCCTTGAACATAATACCTCTTACAACAGCAG640.23087190216803144No Hit
TTCACTCTTCATTTCCAAAAAGCTTGAAACAAGTTTGTCATAGAGATTTT610.220049781753905No Hit
TTTGACTCCTTTGAGCACTGGCTCAGAGTCGTCTTCATCAAATTTGCAGC610.220049781753905No Hit
GGGTGTGGACATTGCTGCTAATACTGTGATCTGGGACTACAAAAGAGATG600.2164424082825295No Hit
AGTGCATTAACATTGGCCGTGACAGCTTGACAAATGTTAAAAACACTATT590.21283503481115398No Hit
GGTACCAACAGCTTCTCTAGTAGCATGACACCCCTCGACATCGAAGCCAA590.21283503481115398No Hit
AAACATGGAGGAGGTGTTGCAGGAGCCTTAAATAAGGCTACTAACAATGC580.2092276613397785No Hit
TGAGAAGTGCTCTGCCTATACAGTTGAACTCGGTACAGAAGTAAATGAGT570.205620287868403No Hit
AGAGTTTCTTAGAGACGGTTGGGAAATTGTTAAATTTATCTCAACCTGTG570.205620287868403No Hit
CATGGCTGCATCACGGTCAAATCAGATTTAGCCACATTCAAAGACTTCTT570.205620287868403No Hit
ATGACAGCATCTGCCACAACACAGGCGAACTCATTTACTTCTGTACCGAG560.2020129143970275No Hit
GGGCTATCATCTTATGTCCTTCCCTCAGTCAGCACCTCATGGTGTAGTCT550.19840554092565205No Hit
TGTTCGCATTCAACCAGGACAGACTTTTTCAGTGTTAGCTTGTTACAATG540.19479816745427656No Hit
TGTAACTGGACACATTGAGCCCACAATTTAGATGATGATTCTACTCTGAG540.19479816745427656No Hit
ATTCTACACTCCAGGGACCACCTGGTACTGGTAAGAGTCATTTTGCTATT530.19119079398290104No Hit
TGGTGAATACAGTCATGTAGTTGCCTTTAATACTTTACTATTCCTTATGT510.18397604704015008No Hit
TCCTTTGCAACCTGAATTAGACTCATTCAAGGAGGAGTTAGATAAATATT510.18397604704015008No Hit
TGCCAGAGATGTCACCTAAATCAACATCTGGTGATGTATGATTCTTAAAA480.17315392662602358No Hit
ACTTTTGAAGAAGCTGCGCTGTGCACCTTTTTGTTAAATAAAGAAATGTA480.17315392662602358No Hit
ACGAAAGCAAGAAAAAGAAGTACGCTATTAACTATTAACGTACCTGTCTC480.17315392662602358No Hit
TGTCAGTCATAGAACAAACACCAATAGTAGATATATGTGCTGGAGCATCT440.15872443274052161No Hit
ACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACAAACT430.15511705926914615No Hit
CTGTTTTACAGGTTCGCGACGTGCTCGTACGTGGCTTTGGAGACTCCGTG420.15150968579777066No Hit
TAAGGATCAGTGCCAAGCTCGTCGCCTAAGTCAAATGACTTTAGATCGGC420.15150968579777066No Hit
ACACACCACTGGTTGTTACTCACAATTTTGACTTCACTTTTAGTTTTAGT400.14429493885501965No Hit
ACGTGGCTTTATTAGTTGCATTGTTAACATGCCAAACAATAGGTTTATGT400.14429493885501965No Hit
TCAGGTGATGGCACAACAAGTCCTATTTCTGAACATGACTACCAGATTGG400.14429493885501965No Hit
TGTTTATCACCCGCGAAGAAGCTATAAGACATGTACGTGCATGGATTGGC400.14429493885501965No Hit
ACAGAATAAACACCAGGTAAGAATGAGTAAACTGGTGTTAAACAGAGTAC390.1406875653836442No Hit
TGGTGAAACTTCATGGCAGACGGGCGATTTTGTTAAAGCCACTTGCGAAT390.1406875653836442No Hit
AAATTGTTTCTTCATGTTGGTAGTTAGAGAAAGTGTGTCTCTTAACTACA350.1262580714981422No Hit
GAACAAAGACCATTGAGTACTCTGGACTAAAACTAAAAGTGAAGTCAAAA340.12265069802676672No Hit
GGTGTTGTTGGAGAAGGTTCCGAAGGTCTTAATGACAACCTTCTTGAAAT340.12265069802676672No Hit
ATTGATGTTGACTTTCTCTTTTTGGAGTATTTCAAGAAGGTTGTCATTAA330.11904332455539121No Hit
ACAAAGAAAACAGTTACACAACAACCATAAAACCAGTTACTTATAAATTG320.11543595108401572No Hit
ACACACTGATTAAAGATTGCTATGTGAGATTAAAGTTAACTACATCTACT320.11543595108401572No Hit
GGCCCCAAGGTTTACCCAATAATACTGCGTCTTGGTTCACCGCTCTCACT320.11543595108401572No Hit
ACAACTACTAACATAGTTACACGGTGTTTAAACCGTGTTTGTACTAATTA320.11543595108401572No Hit
AGCTTGTTTACCACACGTACAAGGTATCTGAACACCTTTCTTAAATTGTT320.11543595108401572No Hit
TCAATTTCCATTTGACTCCTGGGTTTAAATTCTTGTAAATTTCTACTCTG320.11543595108401572No Hit
GCTGGCTTTAGCTTGTGGGTTTACAAACAATTTGATACTTATAACCTCTG320.11543595108401572No Hit
AGTATTGCCCTATTTTCTTCATAACTGGTAATACACTTCAGTGTATAATG310.11182857761264024No Hit
GTGAAGTTCTTTTCTTGTGCAGGGACATAAGTCACATGCAAGAAGACTAC310.11182857761264024No Hit
TCCGCACTATCACCAACATCAGACACTAATGCCTGATCTAGTAACAGTAT310.11182857761264024No Hit
TACCGAAGTTGTAGGAGACATTATACTTAAACCAGCAAATAATAGTTTAA290.10461383066988925No Hit
AGGGCAAACTGGAAAGATTGCTGATTATAATTATAAATTACCAGATGATT280.10100645719851375No Hit

[OK]Adapter Content

Adapter graph