FastQCFastQC Report
Thu 23 Jun 2016
P1234_1005_2.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameP1234_1005_2.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences33756772
Sequences flagged as poor quality0
Sequence length123
%GC52

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TGGTAACTTTTCTGACACCTCCTGCTTAAAACCCAAAAGGTCAGAAGGAT2031240.6017281510210751No Hit
TCTAGATAGTCAAGTTCGACCGTCTTCTCAGCGCTCCGCCAGGGCCGTGG1602870.47482916909235273No Hit
GTGGTAACTTTTCTGACACCTCCTGCTTAAAACCCAAAAGGTCAGAAGGA1189530.352382627106644No Hit
CTGTGGTAACTTTTCTGACACCTCCTGCTTAAAACCCAAAAGGTCAGAAG1045100.30959713802018746No Hit
TGTGGTAACTTTTCTGACACCTCCTGCTTAAAACCCAAAAGGTCAGAAGG1002700.29703669533330973No Hit
GTAACTTTTCTGACACCTCCTGCTTAAAACCCAAAAGGTCAGAAGGATCG972370.2880518314962106No Hit
CCGTTTCCGACCTGGGCCGGTTCACCCCTCCTTAGGCAACCTGGTGGTCC895360.265238631229313No Hit
TACTAACCAGGCCCGACCCTGCTTAGCTTCCGAGATCAGACGAGATCGGG891920.2642195764452833No Hit
CTTAGGACACCTGCGTTACCGTTTGACAGGTGTACCGCCCCAGTCAAACT855910.2535520872671119No Hit
GCTTAAAACCCAAAAGGTCAGAAGGATCGTGAGGCCCCGCTTTCACGGTC849730.2517213434981283No Hit
CTGCAATTCACATTAATTCTCGCAGCTAGCTGCGTTCTTCATCGACGCAC821060.24322823284169467No Hit
CTGTATTGTTATTTTTCGTCACTACCTCCCCGGGTCGGGAGTGGGTAATT692120.2050314526519301No Hit
GGTAACTTTTCTGACACCTCCTGCTTAAAACCCAAAAGGTCAGAAGGATC678280.2009315345673455No Hit
ATCCAAGTACTAACCAGGCCCGACCCTGCTTAGCTTCCGAGATCAGACGA665910.19726708466082005No Hit
ACTTCCTCTAGATAGTCAAGTTCGACCGTCTTCTCAGCGCTCCGCCAGGG617010.18278110241109546No Hit
TCCTGCAATTCACATTAATTCTCGCAGCTAGCTGCGTTCTTCATCGACGC586350.1736984804115749No Hit
GTACTAACCAGGCCCGACCCTGCTTAGCTTCCGAGATCAGACGAGATCGG579920.17179367742863566No Hit
TGCTTAAAACCCAAAAGGTCAGAAGGATCGTGAGGCCCCGCTTTCACGGT556480.16484988552815416No Hit
ATTCACATTAATTCTCGCAGCTAGCTGCGTTCTTCATCGACGCACGAGCC548310.1624296304160836No Hit
CCGTGTCCGGGCCGGGTGAGGTTTCCCGTGTTGGGTCAAATTAAGCCGCA504230.1493715098114239No Hit
TTGCGCCACGGCGGCTTTCGTGCGAGCCCCCGACTCGCGCACGTGTTAGA479150.1419418894673934No Hit
GCAATTCACATTAATTCTCGCAGCTAGCTGCGTTCTTCATCGACGCACGA474770.14064437203889044No Hit
CCTGTGGTAACTTTTCTGACACCTCCTGCTTAAAACCCAAAAGGTCAGAA428270.12686935824314005No Hit
GTTTATCGATTACAGAACAGGCTCCTCTAGAGGGATATGAAGCACCGCCA417090.12355743019504353No Hit
ACTAACCAGGCCCGACCCTGCTTAGCTTCCGAGATCAGACGAGATCGGGC408480.12100683086641105No Hit
CGTGTCCGGGCCGGGTGAGGTTTCCCGTGTTGGGTCAAATTAAGCCGCAG404790.1199137168684257No Hit
CCTTGTGTCGAGGGCTGACTTTCAATAGATCGCAGCGAGGGAGCTGCTCT375700.11129618673254657No Hit
GCCGCAAGTGCGTTCGAAGTGTCGATGATCAATGTGTCCTGCAATTCACA369330.10940915796095668No Hit
CCAGTCAAACTCCCCACCTGGCACTGTCCCCGGAGCGGGTCGCGCCCGGC357040.10576840700289708No Hit
GGTTTGTTAGGTACTGTTTGCATTAATAAATTAAAGCTCCATAGGGTCTT346340.10259867264559537No Hit

[FAIL]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GTCGCAA25800.060.1286931
TTATCGA98150.055.266023
TATCGAT101500.054.306894
ATCGATT106650.051.628165
TCGCAAG32350.048.4903032
GTATTGT216650.045.7534143
GTTATCG66000.045.393623
CGACCTG404300.044.1634868
TAGGTAC105300.044.113828
CGATTAC124600.044.0886577
CCGACCT405450.043.9224627
TGTATTG223600.043.820572
TTTCCGA416050.043.0795944
TGTACGA19000.041.280562
TACCCGC118050.040.8853077
TGTCCGT302450.040.815786
GTTTCCG416250.040.1347583
GTCGTTT52400.040.1068651
TTTATCG136150.039.8955732
TCCGACC459300.039.487946