FastQCFastQC Report
Thu 23 Jun 2016
P1234_1009_1.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameP1234_1009_1.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences20462961
Sequences flagged as poor quality0
Sequence length123
%GC46

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GTCTACGGCCATACCACCCTGAACGCGCCCGATCTCGTCTGATCTCGGAA6270603.064365904817001No Hit
CGACTCTTAGCGGTGGATCACTCGGCTCGTGCGTCGATGAAGAACGCAGC1441540.7044630540027906No Hit
GACTCTTAGCGGTGGATCACTCGGCTCGTGCGTCGATGAAGAACGCAGCT493410.2411234620444226No Hit
CGCGACCTCAGATCAGACGTGGCGACCCGCTGAATTTAAGCATATTAGTC442610.21629812029647127No Hit
GTAGCCCCGGGAGGAACCCGGGGCCGCAAGTGCGTTCGAAGTGTCGATGA302340.14774987842668516No Hit
GCCGGGCGCGGTGGCGCGTGCCTGTAGTCCCAGCTACTCGGGAGGCTGAG281430.13753141590799103No Hit
GCGACCTCAGATCAGACGTGGCGACCCGCTGAATTTAAGCATATTAGTCA211270.10324507777735588No Hit

[FAIL]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GTCTACG852700.0110.514821
TCTACGG857050.0109.490412
CTACGGC864600.0108.541053
TACGGCC866550.0107.804714
ACGGCCA878000.0106.139085
GCCATAC893600.0103.553978
CGGCCAT908050.0102.533066
GGCCATA918100.0101.620157
CCATACC919500.0100.370319
GATCGAT82050.085.576481
CGACTCT283550.076.9878161
ATCGATG92150.076.3237462
GCGACCT174000.067.580762
TGGTCCG54650.066.592674
GCGCGGT62450.065.568946
TTAGCGG330700.064.2950747
TAGCGGT338250.062.4957738
CTTAGCG345000.062.2737856
AGCGGTG340400.061.6720549
GGTCCGA59050.061.5315635