Basic Statistics
Measure | Value |
---|---|
Filename | P1234_1016_2.fastq.gz |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 28242306 |
Sequences flagged as poor quality | 0 |
Sequence length | 123 |
%GC | 47 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
TCTAGATAGTCAAGTTCGACCGTCTTCTCAGCGCTCCGCCAGGGCCGTGG | 49967 | 0.17692252183656676 | No Hit |
TACTAACCAGGCCCGACCCTGCTTAGCTTCCGAGATCAGACGAGATCGGG | 45870 | 0.16241591603745106 | No Hit |
ATCCAAGTACTAACCAGGCCCGACCCTGCTTAGCTTCCGAGATCAGACGA | 44080 | 0.15607790666951912 | No Hit |
TGGTAACTTTTCTGACACCTCCTGCTTAAAACCCAAAAGGTCAGAAGGAT | 37639 | 0.13327169530703337 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
GTCGCAA | 2375 | 0.0 | 51.51617 | 1 |
GTTATCG | 5145 | 0.0 | 51.181255 | 3 |
ACCGTCC | 25300 | 0.0 | 47.750668 | 7 |
GTCGGTA | 2155 | 0.0 | 47.539177 | 1 |
TTATCGG | 5695 | 0.0 | 46.854473 | 4 |
CACCGTC | 26345 | 0.0 | 46.30417 | 6 |
CGGAATT | 5720 | 0.0 | 45.309486 | 8 |
CGATTAC | 5215 | 0.0 | 44.760864 | 7 |
GCGTACG | 2950 | 0.0 | 44.649994 | 1 |
CCGTCCT | 27085 | 0.0 | 44.56068 | 8 |
CGTTATC | 5565 | 0.0 | 44.491 | 2 |
CGTCCTG | 27670 | 0.0 | 43.36417 | 9 |
TCGGAAT | 6155 | 0.0 | 42.772472 | 7 |
TTATCGA | 5530 | 0.0 | 42.432934 | 3 |
CCACCGT | 30590 | 0.0 | 39.769238 | 5 |
TCGTTAT | 5870 | 0.0 | 39.69226 | 1 |
CCCGGTA | 5330 | 0.0 | 39.404133 | 9 |
TCGGTAT | 2715 | 0.0 | 39.02166 | 2 |
TATCGAT | 6235 | 0.0 | 38.19776 | 4 |
GATAGTC | 27300 | 0.0 | 37.424316 | 5 |