Basic Statistics
Measure | Value |
---|---|
Filename | P1234_1014_1.fastq.gz |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 46909968 |
Sequences flagged as poor quality | 0 |
Sequence length | 123 |
%GC | 45 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
GTCTACGGCCATACCACCCTGAACGCGCCCGATCTCGTCTGATCTCGGAA | 739739 | 1.5769334995069704 | No Hit |
CGACTCTTAGCGGTGGATCACTCGGCTCGTGCGTCGATGAAGAACGCAGC | 172200 | 0.3670861595983182 | No Hit |
GACTCTTAGCGGTGGATCACTCGGCTCGTGCGTCGATGAAGAACGCAGCT | 61416 | 0.13092313343722595 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
GTCTACG | 90730 | 0.0 | 110.903725 | 1 |
TCTACGG | 93480 | 0.0 | 107.27245 | 2 |
TACGGCC | 94260 | 0.0 | 105.68447 | 4 |
CTACGGC | 94980 | 0.0 | 105.54757 | 3 |
CGGCCAT | 96550 | 0.0 | 103.04955 | 6 |
ACGGCCA | 98510 | 0.0 | 100.99363 | 5 |
GCCATAC | 102345 | 0.0 | 96.652145 | 8 |
GGCCATA | 108135 | 0.0 | 92.11693 | 7 |
CCATACC | 108785 | 0.0 | 90.90892 | 9 |
CACGACG | 11795 | 0.0 | 55.37091 | 1 |
TTAGCGG | 42085 | 0.0 | 54.40811 | 7 |
CTTAGCG | 43415 | 0.0 | 52.929993 | 6 |
GAACGCG | 97110 | 0.0 | 51.544746 | 20-21 |
CGACTCT | 45400 | 0.0 | 51.48142 | 1 |
AGCGGTG | 44280 | 0.0 | 51.274315 | 9 |
TAGCGGT | 44575 | 0.0 | 51.249466 | 8 |
AACGCGC | 96700 | 0.0 | 50.238094 | 22-23 |
ACGCGCC | 103285 | 0.0 | 48.267986 | 22-23 |
TCGGACG | 9535 | 0.0 | 47.37678 | 106-107 |
CGCGTAT | 3480 | 0.0 | 47.259373 | 110-111 |