FastQCFastQC Report
Thu 23 Jun 2016
P1234_1021_1.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameP1234_1021_1.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences28300555
Sequences flagged as poor quality0
Sequence length123
%GC46

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GTCTACGGCCATACCACCCTGAACGCGCCCGATCTCGTCTGATCTCGGAA4681061.6540523675242411No Hit
CGACTCTTAGCGGTGGATCACTCGGCTCGTGCGTCGATGAAGAACGCAGC1271030.4491184006815414No Hit
GACTCTTAGCGGTGGATCACTCGGCTCGTGCGTCGATGAAGAACGCAGCT490720.1733958927660606No Hit

[FAIL]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GTCTACG661750.0111.757871
TCTACGG689550.0106.854052
TACGGCC690950.0105.115724
CTACGGC699700.0105.078583
CGGCCAT700750.0103.331766
ACGGCCA713800.0101.479825
GCCATAC736450.097.628648
GGCCATA770150.094.193417
CCATACC777950.092.090239
CGACTCT278400.067.838291
TCACGAC60200.059.2902224
TTCACGA62300.057.6667443
CTTAGCG324950.057.5958636
TTAGCGG327000.057.3768927
TAGCGGT330850.056.495858
AGCGGTG330300.056.4307679
GTTCACG65550.053.916422
CACGACG115950.053.706251
CGCGAAT69450.053.131462106-107
GCGACCT104300.052.143932