FastQCFastQC Report
Thu 23 Jun 2016
P1234_1008_2.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameP1234_1008_2.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences16710354
Sequences flagged as poor quality0
Sequence length123
%GC50

[FAIL]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTGCAATTCACATTAATTCTCGCAGCTAGCTGCGTTCTTCATCGACGCAC1043430.6244212420634536No Hit
TCCTGCAATTCACATTAATTCTCGCAGCTAGCTGCGTTCTTCATCGACGC837590.5012401293234123No Hit
TACTAACCAGGCCCGACCCTGCTTAGCTTCCGAGATCAGACGAGATCGGG705420.4221454554463658No Hit
ATCCAAGTACTAACCAGGCCCGACCCTGCTTAGCTTCCGAGATCAGACGA639280.38256520478261563No Hit
ATTCACATTAATTCTCGCAGCTAGCTGCGTTCTTCATCGACGCACGAGCC560760.3355763737859772No Hit
CTTCACAAAGAAAAGAGAACTCTCCCCGGGGCTCCCGCCGGCTTCTCCGG520080.3112321857454366No Hit
GCAATTCACATTAATTCTCGCAGCTAGCTGCGTTCTTCATCGACGCACGA512480.3066841073504487No Hit
TCTAGATAGTCAAGTTCGACCGTCTTCTCAGCGCTCCGCCAGGGCCGTGG470510.28156794284549563No Hit
AGGCGGTCTCCCATCCAAGTACTAACCAGGCCCGACCCTGCTTAGCTTCC392630.2349621079242247No Hit
CAGGCGGTCTCCCATCCAAGTACTAACCAGGCCCGACCCTGCTTAGCTTC355070.21248502575110018No Hit
GTACTAACCAGGCCCGACCCTGCTTAGCTTCCGAGATCAGACGAGATCGG354740.21228754339973885No Hit
CTACAGCACCCGGTATTCCCAGGCGGTCTCCCATCCAAGTACTAACCAGG341300.20424462581702338No Hit
AATTCACATTAATTCTCGCAGCTAGCTGCGTTCTTCATCGACGCACGAGC311610.18647719850818242No Hit
ACTAACCAGGCCCGACCCTGCTTAGCTTCCGAGATCAGACGAGATCGGGC296280.17730324564039757No Hit
TGGTAACTTTTCTGACACCTCCTGCTTAAAACCCAAAAGGTCAGAAGGAT278480.16665116729424165No Hit
GCGGTCTCCCATCCAAGTACTAACCAGGCCCGACCCTGCTTAGCTTCCGA274340.16417366143170875No Hit
CCTGCAATTCACATTAATTCTCGCAGCTAGCTGCGTTCTTCATCGACGCA267010.15978715950601644No Hit
GTCGGGAGGAACGGGGGGCGGGAAAGATCCGCCGGGCCGCCGACACGGCC248650.14879995959391407No Hit
CATCCAAGTACTAACCAGGCCCGACCCTGCTTAGCTTCCGAGATCAGACG211600.12662807741834792No Hit
CCGTTTCCGACCTGGGCCGGTTCACCCCTCCTTAGGCAACCTGGTGGTCC210730.12610744212839536No Hit
CCAGTCAAACTCCCCACCTGGCACTGTCCCCGGAGCGGGTCGCGCCCGGC205400.12291780293822621No Hit
TACAGCACCCGGTATTCCCAGGCGGTCTCCCATCCAAGTACTAACCAGGC179040.10714315208403126No Hit
CCATCCAAGTACTAACCAGGCCCGACCCTGCTTAGCTTCCGAGATCAGAC178920.10707134031989987No Hit
TGCAATTCACATTAATTCTCGCAGCTAGCTGCGTTCTTCATCGACGCACG177400.10616172464090229No Hit
ATTAATTCTCGCAGCTAGCTGCGTTCTTCATCGACGCACGAGCCGAGTGA176160.10541966974487793No Hit
GTCCAAGTACTAACCAGGCCCGACCCTGCTTAGCTTCCGAGATCAGACGA168920.10108702664228418No Hit

[FAIL]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TGTACGA13100.079.5364152
CGCCCAA27650.075.3778461
GTTATCG42350.069.780523
CGGAATT43450.068.267958
TTATCGG44500.067.592634
CCGGTCA24650.065.5512541
GTCGGTA9850.064.78571
TCGGTAT9850.064.1807562
CCAACGT85950.063.046563
TCGTTAT39300.062.716011
TCGGAAT47700.062.553157
CAACGTG90700.062.325554
CGTTATC41350.061.8618932
ATGTACG14200.061.843171
GCCCAAC81100.060.421771
CCCAACG81400.060.045342
CGGACTA14300.058.535222
AACGTGG96600.058.517515
GCGTACG33550.058.4576231
CACAAAG252700.057.3841974