Basic Statistics
Measure | Value |
---|---|
Filename | P1234_1019_1.fastq.gz |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 16902605 |
Sequences flagged as poor quality | 0 |
Sequence length | 123 |
%GC | 51 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
GTCTACGGCCATACCACCCTGAACGCGCCCGATCTCGTCTGATCTCGGAA | 300449 | 1.777530741563209 | No Hit |
CGACTCTTAGCGGTGGATCACTCGGCTCGTGCGTCGATGAAGAACGCAGC | 122096 | 0.7223501939493943 | No Hit |
GACTCTTAGCGGTGGATCACTCGGCTCGTGCGTCGATGAAGAACGCAGCT | 45298 | 0.2679941937943885 | No Hit |
AGATCAGACGTGGCGACCCGCTGAATTTAAGCATATTAGTCAGCGGAGGA | 21133 | 0.12502806520060075 | No Hit |
CGCGACCTCAGATCAGACGTGGCGACCCGCTGAATTTAAGCATATTAGTC | 20988 | 0.12417020926655979 | No Hit |
GAGCACACGTCTGAACTCCAGTCACCGGCTATGATCTCGTATGCCGTCTT | 20067 | 0.11872134502344461 | TruSeq Adapter, Index 7 (96% over 28bp) |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
GTCTACG | 43870 | 0.0 | 112.25096 | 1 |
TCTACGG | 45080 | 0.0 | 108.77151 | 2 |
CTACGGC | 46260 | 0.0 | 105.71916 | 3 |
TACGGCC | 45920 | 0.0 | 105.54783 | 4 |
ACGGCCA | 47470 | 0.0 | 101.80553 | 5 |
GCCATAC | 47310 | 0.0 | 101.439125 | 8 |
GGCCATA | 49510 | 0.0 | 97.75921 | 7 |
CCATACC | 49700 | 0.0 | 96.19673 | 9 |
CGGCCAT | 50930 | 0.0 | 94.86235 | 6 |
TTCACGA | 4355 | 0.0 | 73.90836 | 3 |
GTTCACG | 4495 | 0.0 | 68.48746 | 2 |
TCACGAC | 4910 | 0.0 | 65.55416 | 4 |
CTTAGCG | 30225 | 0.0 | 59.56291 | 6 |
CGACTCT | 31290 | 0.0 | 58.82649 | 1 |
TTAGCGG | 30725 | 0.0 | 58.498043 | 7 |
AGCGGTG | 30510 | 0.0 | 57.87539 | 9 |
TAGCGGT | 31650 | 0.0 | 56.215256 | 8 |
GACTCTT | 34360 | 0.0 | 53.45145 | 2 |
ACTCTTA | 34315 | 0.0 | 53.436428 | 3 |
TCTTAGC | 33950 | 0.0 | 53.391182 | 5 |