Basic Statistics
Measure | Value |
---|---|
Filename | P1234_1003_1.fastq.gz |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 33724069 |
Sequences flagged as poor quality | 0 |
Sequence length | 123 |
%GC | 51 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
GTCTACGGCCATACCACCCTGAACGCGCCCGATCTCGTCTGATCTCGGAA | 553296 | 1.6406561141836116 | No Hit |
GGTTTAGTGAGGCCCTCGGATCGGCCCCGCCGGGGTCGGCCCACGGCCCT | 113579 | 0.33678913419374157 | No Hit |
CGACTCTTAGCGGTGGATCACTCGGCTCGTGCGTCGATGAAGAACGCAGC | 96707 | 0.28675958408221736 | No Hit |
CGCGACCTCAGATCAGACGTGGCGACCCGCTGAATTTAAGCATATTAGTC | 80986 | 0.24014302663181009 | No Hit |
GTAGCCCCGGGAGGAACCCGGGGCCGCAAGTGCGTTCGAAGTGTCGATGA | 55681 | 0.1651075971882278 | No Hit |
GGAGCAGAAGGGCAAAAGCTCGCTTGATCTTGATTTTCAGTACGAATACA | 54001 | 0.16012599191396507 | No Hit |
GCCGGGCGCGGTGGCGCGTGCCTGTAGTCCCAGCTACTCGGGAGGCTGAG | 48761 | 0.14458812784424085 | No Hit |
GGATGGTTTAGTGAGGCCCTCGGATCGGCCCCGCCGGGGTCGGCCCACGG | 48246 | 0.14306102860838057 | No Hit |
GCGACCTCAGATCAGACGTGGCGACCCGCTGAATTTAAGCATATTAGTCA | 42997 | 0.12749647736754421 | No Hit |
CAGGGAGGACAGAAACCTCCCGTGGAGCAGAAGGGCAAAAGCTCGCTTGA | 42872 | 0.12712582221320923 | No Hit |
CGATTGGATGGTTTAGTGAGGCCCTCGGATCGGCCCCGCCGGGGTCGGCC | 37391 | 0.11087333500592707 | No Hit |
GGGCAAAAGCTCGCTTGATCTTGATTTTCAGTACGAATACAGACCGTGAA | 36640 | 0.10864643883868226 | No Hit |
GTTTAGTGAGGCCCTCGGATCGGCCCCGCCGGGGTCGGCCCACGGCCCTG | 35366 | 0.10486872150569969 | No Hit |
GGATGTGAGGGCGATCTGGCTGCGACATCTGTCACCCCATTGATCGCCAG | 34057 | 0.10098722072950331 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
GTCTACG | 65325 | 0.0 | 109.18665 | 1 |
TCTACGG | 67675 | 0.0 | 105.308846 | 2 |
TACGGCC | 68480 | 0.0 | 103.85766 | 4 |
CTACGGC | 71545 | 0.0 | 99.669655 | 3 |
CGGCCAT | 72790 | 0.0 | 97.647285 | 6 |
ACGGCCA | 73920 | 0.0 | 96.13486 | 5 |
GCCATAC | 74550 | 0.0 | 94.71907 | 8 |
GGCCATA | 75155 | 0.0 | 94.64346 | 7 |
CCATACC | 76375 | 0.0 | 92.142166 | 9 |
CGACTCT | 22385 | 0.0 | 57.646366 | 1 |
TTAGCGG | 22285 | 0.0 | 55.77854 | 7 |
CTTAGCG | 23740 | 0.0 | 52.606537 | 6 |
GCGCGGT | 12590 | 0.0 | 49.41247 | 6 |
TAGCCCC | 15495 | 0.0 | 47.23814 | 2 |
AACGCGC | 74425 | 0.0 | 47.23502 | 22-23 |
GAACGCG | 77380 | 0.0 | 46.87298 | 20-21 |
AGCGGTG | 27060 | 0.0 | 45.869694 | 9 |
CATACCA | 77365 | 0.0 | 45.81758 | 10-11 |
GTAGCCC | 15940 | 0.0 | 45.736145 | 1 |
CGTTCGA | 8015 | 0.0 | 45.183876 | 32-33 |