FastQCFastQC Report
Thu 23 Jun 2016
P1234_1003_2.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameP1234_1003_2.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences33724069
Sequences flagged as poor quality0
Sequence length123
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TCTAGATAGTCAAGTTCGACCGTCTTCTCAGCGCTCCGCCAGGGCCGTGG2343060.6947738127329772No Hit
TGGTAACTTTTCTGACACCTCCTGCTTAAAACCCAAAAGGTCAGAAGGAT1132610.3358461874811132No Hit
TACTAACCAGGCCCGACCCTGCTTAGCTTCCGAGATCAGACGAGATCGGG885360.26253059795364553No Hit
ACTTCCTCTAGATAGTCAAGTTCGACCGTCTTCTCAGCGCTCCGCCAGGG847220.25122116788457527No Hit
GTGGTAACTTTTCTGACACCTCCTGCTTAAAACCCAAAAGGTCAGAAGGA674250.199931390248312No Hit
ATCCAAGTACTAACCAGGCCCGACCCTGCTTAGCTTCCGAGATCAGACGA640240.18984660480916465No Hit
CTGTGGTAACTTTTCTGACACCTCCTGCTTAAAACCCAAAAGGTCAGAAG616930.1829346274911251No Hit
GTACTAACCAGGCCCGACCCTGCTTAGCTTCCGAGATCAGACGAGATCGG601670.17840966936700314No Hit
TGTGGTAACTTTTCTGACACCTCCTGCTTAAAACCCAAAAGGTCAGAAGG577610.1712752989563626No Hit
GTAACTTTTCTGACACCTCCTGCTTAAAACCCAAAAGGTCAGAAGGATCG551880.16364573325953047No Hit
CTTAGGACACCTGCGTTACCGTTTGACAGGTGTACCGCCCCAGTCAAACT526600.15614960341825893No Hit
CCTTTAAGTTTCAGCTTTGCAACCATACTCCCCCCGGAACCCAAAGACTT515690.15291452523122284No Hit
GCTTAAAACCCAAAAGGTCAGAAGGATCGTGAGGCCCCGCTTTCACGGTC487630.1445940583267102No Hit
TACGACTTTTACTTCCTCTAGATAGTCAAGTTCGACCGTCTTCTCAGCGC462460.13713054613902018No Hit
GTTCTTGATTAATGAAAACATTCTTGGCAAATGCTTTCGCTCTGGTCCGT438890.13014147254887895No Hit
ACTAACCAGGCCCGACCCTGCTTAGCTTCCGAGATCAGACGAGATCGGGC411290.12195740674116164No Hit
GGTAACTTTTCTGACACCTCCTGCTTAAAACCCAAAAGGTCAGAAGGATC403730.11971568436774341No Hit
GGTTTGTTAGGTACTGTTTGCATTAATAAATTAAAGCTCCATAGGGTCTT397760.11794543535063934No Hit
CTCTAGATAGTCAAGTTCGACCGTCTTCTCAGCGCTCCGCCAGGGCCGTG389050.11536271023523288No Hit
TAGTCAAGTTCGACCGTCTTCTCAGCGCTCCGCCAGGGCCGTGGGCCGAC378220.11215135397807424No Hit
CTTTAAGTTTCAGCTTTGCAACCATACTCCCCCCGGAACCCAAAGACTTT355100.10529571624349364No Hit
GTTTATCGATTACAGAACAGGCTCCTCTAGAGGGATATGAAGCACCGCCA345930.1025765900312919No Hit

[FAIL]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CGATTAC91500.047.698167
GTTATCG94500.046.628373
TTATCGA94800.046.419083
CCGTTAA67300.043.147351
TATCGAT103350.042.748374
TTATCGG105650.042.3162354
CGGACTA20050.040.8727762
TTTATCG107100.040.499462
CGTTATC93650.039.627982
CGGAATT113500.039.329678
TAGGTAC135650.038.8594478
TATCGGA115350.038.5026445
TCGTTAT91350.038.3889121
GATAGTC847750.038.1977465
TAGATAG848950.037.545883
CTAGATA792050.037.4028052
AGATAGT867750.037.392984
ATCGATT118400.037.066025
CCGACTA23300.036.4333951
TAGTCAA906500.035.7605557