FastQCFastQC Report
Thu 23 Jun 2016
P1234_1022_2.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameP1234_1022_2.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences101
Sequences flagged as poor quality0
Sequence length123
%GC51

[FAIL]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGCGATCCACGGGAAGGGCCCGGCTCGCGTCCAGAGTCGCCGCCGCCG10.9900990099009901No Hit
GGCGCTTCTCGAAGCGGTTGTACTTGCGGATGTAGTGCAGATAATCTCGG10.9900990099009901No Hit
TGGAATGAAGTGGTGTGATCTCGTCTCACTGCAGCCTCCACCCCCTGGGT10.9900990099009901No Hit
TATCCACACTGTAGCCAGATCAATCTTTTCAAAATACAAATACGAATATA10.9900990099009901No Hit
GTTTAAGAAAAACTTACAGTAACCATCTGAGAAAATGTGTATAAAAGTAA10.9900990099009901No Hit
TTCCTTTCCTTCCTTCTTCCCTCCTTTCCTTCTTTCCATTTTCCCTCTCT10.9900990099009901No Hit
CTGCCAGGCCTTCCCAGCCGTCCCGGAGCCGGTCGCGGCGCACCGCCGCG10.9900990099009901No Hit
AGGGAGGGAAAGTTTGAGGATGTTTTACTGCTAATGCTGGCATGGGCAAA10.9900990099009901No Hit
GGGCCGCAAGTGCGTTCGAAGTGTCGATGATCAATGTGTCCTGCAATTCA10.9900990099009901No Hit
CCTAAAAATTTTCGCCACTCCAACACTTTACCACTATTTCATTTTATTTT10.9900990099009901No Hit
TCCGGGCCGGGTGAGGTTTCCCGTGTTGGTTCAAATTAAGCCGCAGGCTC10.9900990099009901No Hit
TCTCTTCTTTCCTTCCTTCCCTCCTTCCTTTCTCCCTTCCATCTGCCTGT10.9900990099009901No Hit
CCCGTACCTCCCCCTCTTGTCGTGGGCCGCGATGCAGCTGTTCTCAATGC10.9900990099009901No Hit
GCCTCTGATTGATTTATTCTGACATGTTTTCTTTATTTTCTTTCATAAAA10.9900990099009901No Hit
ACTATCTAGAAGAAAACCCCCGATCGACCCCACTTCCTACGCGGAGCAAC10.9900990099009901No Hit
TGGAGCGCGGGCGTAGATGCACCAGGCAGCGGAACGATAGTTGGTAGTCC10.9900990099009901No Hit
AAGACCCACTCAAAGCAAACTTCGCAACGAGTAACAGACATATATATTAA10.9900990099009901No Hit
AAAAAGAGACACGACCAAATACGATAATGAAAACATTAACCAAACTACAC10.9900990099009901No Hit
TCTCCTGACCTCAGGTGATCTGCCGGCCTTGGTCTCCCAAAATGCTGGGA10.9900990099009901No Hit
CTCTGACTGCCCGAACTTCAGCCGGAGACTCTCTTCAAACTCCTGATCTG10.9900990099009901No Hit
GGGTCCTAACACGTGCGCTCATGCTCCACCTCCCCAGCGCGGCGGGCGAG10.9900990099009901No Hit
GGGGCGTGATATGTGTCCTTTTATCCTTATAATGATGTTTGAAGCCTCTA10.9900990099009901No Hit
TCGCCCCCCCAGATCGGAAGAGGGTCGTGTAGGGACAGAGTGTGCCTCTA10.9900990099009901Illumina Single End PCR Primer 1 (96% over 25bp)
GCCCTGACATTCTTTTCCTTTTATGGTTAATAACAGAGGGGGGAAATACT10.9900990099009901No Hit
GAAAGGCCAGGAAGGCGGTAGAGCCGGTGATCCCAGAGGAAAAGTAGAGA10.9900990099009901No Hit
CTCTCAACATCAATACAAAACACAGGAATTCTTTCTTTTTTTCTCCTTCC10.9900990099009901No Hit
GGTTTGGTAGGTACTGTTTGCATTAATAAATTAACGCTCCATAGGGTCTT10.9900990099009901No Hit
TGTAGGCTTTGAAGTCATCTGGCATTAGCATGACAGGAACAGGAACATTG10.9900990099009901No Hit
GTCAGAGATGGCCGTGTAGAGGGGCCGCTGCGAGGGCCCCATATAGGAGA10.9900990099009901No Hit
TCCAAGTACTAACCAGGCCCGACCCTGCTTAGCTTCCGAGATCAGACGAG10.9900990099009901No Hit
AGCTAATGTGAGTGGAGTGAGTGGAGTGAGTAGAATGGTGGAGTGGAGGA10.9900990099009901No Hit
GGTGGGGGCAGTTATTTTGGCAAATTGGGAGCCTTTCATTTCCTTTTTTT10.9900990099009901No Hit
CCTATGTCGAAGCCCCCATCGCTGGGTCAATAGTACTTGCCACAGTACTC10.9900990099009901No Hit
TTCAAGATATCCTCCATCACTGGCCTCCCAAAAGTGCTGGGATTATAGGT10.9900990099009901No Hit
TCCTTGATTAATGAAAACATTCTTAATCATGGCCTCAGTTCCGAAAACCA10.9900990099009901No Hit
TACCTGGCACTGTCCCCGGAGCGGGTCGCGCCCGGCCAGGGAATCCTGGT10.9900990099009901No Hit
TGTGCGGATACACGAATGTGCGGGAAACACAGGGGGGGTAGCTCCAACTG10.9900990099009901No Hit
GTTTTTAAAAAGCCGCTCCTGAACGTCGGTTTCAGAAGCGAGAGGAGCGA10.9900990099009901No Hit
CCTGCCCCTGGCAGCCACTGATCTGATTTCTGTCTCCACAGTTTTGCCTT10.9900990099009901No Hit
CGGAGGAGTTTTGGAATAGTAACAGAACAAATACTTCTGAAGAAAGTAGT10.9900990099009901No Hit
GGTAAATCCTTGTGGAGGTGGCCTGTGTGGCTATTGGCACCTTCATCATC10.9900990099009901No Hit
TCTGTCTGTTTATGGAAAAAATTTATCAACCCATGGTCTATAGTATAGTG10.9900990099009901No Hit
TCTTTCAAAAGCAAACTACATTTAAAAAATAATAATACATTTTGGGAGGC10.9900990099009901No Hit
AAAGAGGGGCCGGGGGGATCCTTAATAGGCGATGCTCTACCTCCACACGT10.9900990099009901No Hit
TTCCAGAAATAATAAATGCCCCTCTCCCCTGACCCACCCTAGTCCTTTCT10.9900990099009901No Hit
TAGATGCAGAAAAGGCCTTTGACAAAATTCAACAACCCTTCATGCTAAAA10.9900990099009901No Hit
CTTAGGACACCTGCGTTACCGTTTGACAGGTGTACCGCCCCAGTCAAACT10.9900990099009901No Hit
TTCCTATTATTCACATACACCCAAATATCCAATACCCATTCCTATGTTAC10.9900990099009901No Hit
AGTACTAACCAGGCCCGACCCTGCTTAGCTTCCGAGATCAGACGAGATCG10.9900990099009901No Hit
CACATCCCTGGGCTAATTTGGCCTTCCAGGAGCTATTCCTCTGACACTCT10.9900990099009901No Hit
TCCAACTGTGTTACATGAATGGAATCTAACTGCTGGCTGCCTGCACCAAT10.9900990099009901No Hit
CCCAAACTATATACTGGCCTGTCTGTCCAATTTGTCATGGCATTTTGAAT10.9900990099009901No Hit
TCACGGCGGCTTTCGTGCGAGCCCCCGACTCGCGCACGTGTTAGACTCCT10.9900990099009901No Hit
TTCCAAGTACTAACCAGGCCCGACCCTGCTTAGCTTCCGAGATCAGACGA10.9900990099009901No Hit
GCGGAGAAATTAGTTGTGAGCTCTCAGACTCTTCTAGTGCTTTCCTTTTA10.9900990099009901No Hit
GCGAGAGGGAGGCTTCCTGTGAGGCCCACTTCCTGTGAAGCGTTTGGTCT10.9900990099009901No Hit
GCCCTCTCTCAGTATTGCTGACCTTCCCAGATTCTCTAGTCCCCCTTTCC10.9900990099009901No Hit
CCTCTTGTAAAGCAGTATTAACGTCCATTACACCTCCAGCAGCAATGCCT10.9900990099009901No Hit
TAACATCAAAGCACACAATGAATTCTCACACACCCCAGGCCCCCCCCACA10.9900990099009901No Hit
TAGCAACAAGCAAAGCACATCGCAAGATTAAAACAAAGAATCCGCCGTGA10.9900990099009901No Hit
CTCCCTGAGCTCGCCTTAGGACACCTGCGTTACCGTTTGACAGGTGTACC10.9900990099009901No Hit
AAAGGCGGGGAGAGATAAGTGGGTTCCCCAGATCTGCGTATTACAGCGAG10.9900990099009901No Hit
ATATGCCTTATGGGAGGGGTTGTCCCCTGTCTATAGACATCCCCCTGCCT10.9900990099009901No Hit
GCTAATTTCAAACTAGTGACTTGGAAAGATACTTAATATGTTTTGCTTTT10.9900990099009901No Hit
ACTCCATCTTACAATACTGGTAAGGCAACAGCCACACACAAATACCAACA10.9900990099009901No Hit
ACTCTCTGGAACATAAGCTCTGTGAGAGCACGGACCTCATCTGTCCTCTC10.9900990099009901No Hit
GGGTGGAGGTGGGGGGGGCGCGCCGGCGCCCGCCGGGCTCCCCGGGGGCG10.9900990099009901No Hit
AAACCAAGCCAACATCTAGTACCTGCAACAGAGCGGTACGCGCCCGACCG10.9900990099009901No Hit
CCCTGCCCACATGGAACATTGTGACATATATGTGGGACCTGCACCCAGGT10.9900990099009901No Hit
GTCTCGCTATGTTGCTCAGGCTGGAGTGCAGTGACTATTCACAGGCGCGA10.9900990099009901No Hit
ACTTATATCTTCCCGGTTTTTCTTGCCAGGGATGCTAACACAATCCTGAG10.9900990099009901No Hit
CGTACAGGTAGTCGGAGATGTCTCGCTTCTTCCTCTTCTCATCCACCTGA10.9900990099009901No Hit
AACCAGACAAACAAGGAAAGAAGCAATAAGACAAGAGAAGTAAGAAGTAA10.9900990099009901No Hit
AGGTATCTCTGTCAGCTTCCCCTCTTGTGAGTCTCGCAGGTCGCTCACCC10.9900990099009901No Hit
GGGGGGAGGGTTTTAGGTCTTGTTTTTTCTCCTTCAAAAAATTTGGGTCC10.9900990099009901No Hit
GCTTACAACAATAAGGATGTTTACTAGACTGTCTCTCTCTCTCCATCCAG10.9900990099009901No Hit
CGCCTTGTTTTACAGGGAGATCAAAGTTCACAACAATTGTGACCTGCTTC10.9900990099009901No Hit
TGTGCTAGTCTGCTAGAGCTATCAAAACAGAATACCACAGACTGGGTGGC10.9900990099009901No Hit
TGCGGATATGGGTACGGCCCGGCGCGAGATTTACACCCTCTCCCCCGGAT10.9900990099009901No Hit
GCTTTTAGCTTTGAGAACTATGAGAAATAAATTTGTTGTTTGTAAACCAC10.9900990099009901No Hit
CCCAATACGGAGAGAAGAACGATCATCAATGGCTGACGGCAGTTGCAGCC10.9900990099009901No Hit
GCGATCGCTCACACGGCCCGCGCGCACGCCAGAGGGGAGCACGGGACGTG10.9900990099009901No Hit
GCAACCACTTACAACTGAATTTTTATTTTTTGTAATATTTAGCTCCATAT10.9900990099009901No Hit
TCCCACCTTCAATGTATGCCATAATTTTTAAAAAGTTCCCAATCCACTTC10.9900990099009901No Hit
GGTGTGCGATCGGCCCGAGGTTATCTAGAGTCACCAAAGCCGCCCAGATC10.9900990099009901No Hit
GGGTTTAGGAATGATGGGTTCACATGTGAGGGGTTGATGTTTCATGCCCT10.9900990099009901No Hit
ATTCACATTAATTCTTGCCGCTAGCTGCGTTCTTTATCGACGCATGAGCC10.9900990099009901No Hit
CCTCTAGCTATGATGTCTGCCTACTTTCCTTTGTAGAGAGAATGCATGTA10.9900990099009901No Hit
TGTGACATTCTAACACTTCCAATTTGTTCCCGCCATTCTGGCTTGGGATC10.9900990099009901No Hit
TCACATCTGGTCTCAGTTCCTTTATCCTCATAGCAAAGGCATCTCACAGT10.9900990099009901No Hit
CATGAGTCTGTTCCAAGCTCCGGCAAAGGAGGCATCCGCCGGGCCCCTCC10.9900990099009901No Hit
CCTCAAGTGCGTTCGAAGTGTCGATGATCAATGTGTCCTGCAATTCACAT10.9900990099009901No Hit
GGGTGAAAGTAGTTTAGAATTTGAATTTCTTCTTCTTCATCAAGAAAGCC10.9900990099009901No Hit
TCTCACCGTGACCCGAGATCGGAAGAGCGTCGTGTAGGGAAAGAGTGTGC10.9900990099009901Illumina Single End PCR Primer 1 (96% over 33bp)
CTGTGGTAACTTTTCTGACACCTCCTGCTTAAAACCCAAAAGGTCAGAAG10.9900990099009901No Hit
TACCAAAAGTGGCCCACTAGGCACTCGCATTCCACGCCCGGCTCCACGCC10.9900990099009901No Hit
TTCCCATGCCCCCTACTTTCATCAAGGAATCAAAAATAAGGTAAAAGAAT10.9900990099009901No Hit
TTCTGTAGCCCAGGCTGGAGTGCAGTAATGTGATCTCGGCTCACTGCAAC10.9900990099009901No Hit
CGGGGCCGCAAGTGCGTTCGAAGTGTCGATGATCAATGTGTCCTGCAATT10.9900990099009901No Hit
GGGACTACAGGCATGCACAACCAAGCCTTGCTAATTTTTGTGTTTTTAAT10.9900990099009901No Hit
TGAGCTCGCCTTAGGACACCTGCGTTACCGTTTGACAGGTGTACCGCCCC10.9900990099009901No Hit

[FAIL]Adapter Content

Adapter graph

[OK]Kmer Content

No overrepresented Kmers