Basic Statistics
Measure | Value |
---|---|
Filename | P1234_1010_1.fastq.gz |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 11357451 |
Sequences flagged as poor quality | 0 |
Sequence length | 123 |
%GC | 48 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
GTCTACGGCCATACCACCCTGAACGCGCCCGATCTCGTCTGATCTCGGAA | 475715 | 4.188571889942558 | No Hit |
CGACTCTTAGCGGTGGATCACTCGGCTCGTGCGTCGATGAAGAACGCAGC | 75364 | 0.6635643860581041 | No Hit |
CGCGACCTCAGATCAGACGTGGCGACCCGCTGAATTTAAGCATATTAGTC | 29744 | 0.2618897497334569 | No Hit |
GACTCTTAGCGGTGGATCACTCGGCTCGTGCGTCGATGAAGAACGCAGCT | 23896 | 0.2103993228762334 | No Hit |
CCGGTTCACCCCTCCTTAGGCAACCTGGTGGTCCCCCGCTCCCGGGAGGT | 23496 | 0.2068774058545355 | No Hit |
GTAGCCCCGGGAGGAACCCGGGGCCGCAAGTGCGTTCGAAGTGTCGATGA | 18029 | 0.15874160496047923 | No Hit |
GCGACCTCAGATCAGACGTGGCGACCCGCTGAATTTAAGCATATTAGTCA | 15409 | 0.1356730484683579 | No Hit |
GCCGGGCGCGGTGGCGCGTGCCTGTAGTCCCAGCTACTCGGGAGGCTGAG | 15035 | 0.13238005605307038 | No Hit |
GAGCACACGTCTGAACTCCAGTCACTCCGCGAAATCTCGTATGCCGTCTT | 13284 | 0.11696286429058775 | TruSeq Adapter, Index 6 (96% over 28bp) |
TCTACGGCCATACCACCCTGAACGCGCCCGATCTCGTCTGATCTCGGAAG | 13005 | 0.11450632716795345 | No Hit |
CGGCGGGGGACCGTCCCCCGACCGGCGACCGGCCGCCGCCGGGCGCATTT | 12345 | 0.10869516408215188 | No Hit |
GATCGATGATGACTTCCATATATACATTCCTTGGAAAGCTGAACAAAATG | 12120 | 0.10671408575744681 | No Hit |
TACCTGGTTGATCCTGCCAGTAGCATATGCTTGTCTCAAAGATTAAGCCA | 11429 | 0.10062997410246366 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
TCTACGG | 68490 | 0.0 | 110.52126 | 2 |
CTACGGC | 68520 | 0.0 | 110.43025 | 3 |
TACGGCC | 69010 | 0.0 | 109.4176 | 4 |
GTCTACG | 69720 | 0.0 | 109.1831 | 1 |
CGGCCAT | 69395 | 0.0 | 108.19032 | 6 |
ACGGCCA | 69950 | 0.0 | 107.537544 | 5 |
GCCATAC | 70240 | 0.0 | 106.20218 | 8 |
GGCCATA | 71580 | 0.0 | 105.033295 | 7 |
CCATACC | 72025 | 0.0 | 103.6026 | 9 |
GATCGAT | 9290 | 0.0 | 93.62979 | 1 |
ATCGATG | 9995 | 0.0 | 86.73335 | 2 |
CGGTTCA | 4650 | 0.0 | 76.12981 | 2 |
TGGTCCG | 3635 | 0.0 | 71.67464 | 4 |
CGATGAT | 13490 | 0.0 | 68.54946 | 4 |
GCGACCT | 13330 | 0.0 | 67.53168 | 2 |
CGACTCT | 18235 | 0.0 | 66.47333 | 1 |
GTAGCCC | 5150 | 0.0 | 65.90281 | 1 |
GTGCTCG | 2930 | 0.0 | 64.597015 | 1 |
GTTCACG | 2400 | 0.0 | 62.554268 | 2 |
TTAGCGG | 19460 | 0.0 | 60.813915 | 7 |