Basic Statistics
Measure | Value |
---|---|
Filename | P1234_1009_1.fastq.gz |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 20462961 |
Sequences flagged as poor quality | 0 |
Sequence length | 123 |
%GC | 46 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
GTCTACGGCCATACCACCCTGAACGCGCCCGATCTCGTCTGATCTCGGAA | 627060 | 3.064365904817001 | No Hit |
CGACTCTTAGCGGTGGATCACTCGGCTCGTGCGTCGATGAAGAACGCAGC | 144154 | 0.7044630540027906 | No Hit |
GACTCTTAGCGGTGGATCACTCGGCTCGTGCGTCGATGAAGAACGCAGCT | 49341 | 0.2411234620444226 | No Hit |
CGCGACCTCAGATCAGACGTGGCGACCCGCTGAATTTAAGCATATTAGTC | 44261 | 0.21629812029647127 | No Hit |
GTAGCCCCGGGAGGAACCCGGGGCCGCAAGTGCGTTCGAAGTGTCGATGA | 30234 | 0.14774987842668516 | No Hit |
GCCGGGCGCGGTGGCGCGTGCCTGTAGTCCCAGCTACTCGGGAGGCTGAG | 28143 | 0.13753141590799103 | No Hit |
GCGACCTCAGATCAGACGTGGCGACCCGCTGAATTTAAGCATATTAGTCA | 21127 | 0.10324507777735588 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
GTCTACG | 85270 | 0.0 | 110.51482 | 1 |
TCTACGG | 85705 | 0.0 | 109.49041 | 2 |
CTACGGC | 86460 | 0.0 | 108.54105 | 3 |
TACGGCC | 86655 | 0.0 | 107.80471 | 4 |
ACGGCCA | 87800 | 0.0 | 106.13908 | 5 |
GCCATAC | 89360 | 0.0 | 103.55397 | 8 |
CGGCCAT | 90805 | 0.0 | 102.53306 | 6 |
GGCCATA | 91810 | 0.0 | 101.62015 | 7 |
CCATACC | 91950 | 0.0 | 100.37031 | 9 |
GATCGAT | 8205 | 0.0 | 85.57648 | 1 |
CGACTCT | 28355 | 0.0 | 76.987816 | 1 |
ATCGATG | 9215 | 0.0 | 76.323746 | 2 |
GCGACCT | 17400 | 0.0 | 67.58076 | 2 |
TGGTCCG | 5465 | 0.0 | 66.59267 | 4 |
GCGCGGT | 6245 | 0.0 | 65.56894 | 6 |
TTAGCGG | 33070 | 0.0 | 64.295074 | 7 |
TAGCGGT | 33825 | 0.0 | 62.495773 | 8 |
CTTAGCG | 34500 | 0.0 | 62.273785 | 6 |
AGCGGTG | 34040 | 0.0 | 61.672054 | 9 |
GGTCCGA | 5905 | 0.0 | 61.531563 | 5 |