FastQCFastQC Report
Thu 23 Jun 2016
P1234_1012_1.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameP1234_1012_1.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences26629350
Sequences flagged as poor quality0
Sequence length123
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GTCTACGGCCATACCACCCTGAACGCGCCCGATCTCGTCTGATCTCGGAA2812881.056308171247139No Hit
CGACTCTTAGCGGTGGATCACTCGGCTCGTGCGTCGATGAAGAACGCAGC1280850.48099183795323586No Hit
GACTCTTAGCGGTGGATCACTCGGCTCGTGCGTCGATGAAGAACGCAGCT446460.1676571151755488No Hit
AGGGAGGACAGAAACCTCCCGTGGAGCAGAAGGGCAAAAGCTCGCTTGAT430760.16176136480988082No Hit
AAGGCGAGCTCAGGGAGGACAGAAACCTCCCGTGGAGCAGAAGGGCAAAA430330.1615998888444517No Hit
GGTTTAGTGAGGCCCTCGGATCGGCCCCGCCGGGGTCGGCCCACGGCCCT333380.12519269152269957No Hit
ATACCACCCTGAACGCGCCCGATCTCGTCTGATCTCGGAAGCTAAGCAGG298830.11221828546322009No Hit
GGATCGGCCCCGCCGGGGTCGGCCCACGGCCCTGGCGGAGCGCTGAGAAG282490.10608219877691345No Hit

[FAIL]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GTCTACG382350.0110.415771
TCTACGG394450.0106.628842
TACGGCC401450.0104.01294
CTACGGC404550.0103.894553
CGGCCAT419250.099.243296
ACGGCCA439900.094.668855
GCCATAC437050.094.475558
GGCCATA465750.089.421577
CCATACC486350.084.76679
CTTAGCG302700.060.1693046
TTAGCGG304450.059.5924267
AGCGGTG317550.056.543719
TAGCGGT340700.053.061698
TCGCGTA40650.053.057312108-109
CGCGTAT43200.051.451797110-111
CACGACG80700.050.8880651
AATCGCG44050.049.233807106-107
TCTTAGC372900.049.142215
TTCACGA37650.049.029363
CGAGCTC136050.048.6478775