FastQCFastQC Report
Thu 23 Jun 2016
P1234_1015_2.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameP1234_1015_2.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences13216614
Sequences flagged as poor quality0
Sequence length123
%GC48

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TCTAGATAGTCAAGTTCGACCGTCTTCTCAGCGCTCCGCCAGGGCCGTGG212990.16115322729407092No Hit
TACTAACCAGGCCCGACCCTGCTTAGCTTCCGAGATCAGACGAGATCGGG203580.1540334006879523No Hit
ATCCAAGTACTAACCAGGCCCGACCCTGCTTAGCTTCCGAGATCAGACGA194160.14690600784739571No Hit
TGGTAACTTTTCTGACACCTCCTGCTTAAAACCCAAAAGGTCAGAAGGAT137090.10372550790996847No Hit

[FAIL]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GTTATCG24250.047.7817273
TTATCGG25950.044.652194
CGTTATC24600.044.498612
GCGTACG13250.043.743671
CGGAATT26250.043.0146458
ACCGTCC119200.042.9457447
CACCGTC122850.042.0542646
TCGGAAT27050.041.742497
CCCGGTA25250.041.2425279
CCGTCCT126650.040.6042988
CGATTAC22400.040.2217567
GTCGCAA10950.040.099881
CGTCCTG127750.039.979749
TCGTTAT26150.038.7320371
CGACCTG45250.038.270268
TGTACGA9100.037.9533922
TTATCGA24200.037.7239883
GTCGGTA10750.037.578251
GATAGTC122300.037.1788835
CCGACTA10900.036.5241