FastQCFastQC Report
Thu 23 Jun 2016
P1234_1017_1.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameP1234_1017_1.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences34064465
Sequences flagged as poor quality0
Sequence length123
%GC45

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GTCTACGGCCATACCACCCTGAACGCGCCCGATCTCGTCTGATCTCGGAA4928271.4467480995224788No Hit
CGACTCTTAGCGGTGGATCACTCGGCTCGTGCGTCGATGAAGAACGCAGC653070.1917159127554183No Hit

[FAIL]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GTCTACG704000.0112.476681
TCTACGG729500.0108.144622
CTACGGC746100.0105.534943
TACGGCC744850.0104.567014
CGGCCAT758700.0102.35236
ACGGCCA773750.0100.4493945
GCCATAC796300.096.8851248
GGCCATA842350.092.5756767
CCATACC842100.091.095529
TCACGAC63650.064.152624
TTCACGA68150.060.3451543
GTTCACG68300.058.6730962
CACGACG137000.057.052041
GTGCTCG43650.053.2640841
CGCGTAT70350.053.177746110-111
TATCGCG68200.053.14027106-107
ACGCCGT80450.053.091507110-111
TCGCGTA68800.052.80752108-109
ATCGCGT70200.051.839714108-109
TCGGACG97100.050.896446106-107