FastQCFastQC Report
Thu 23 Jun 2016
P1234_1010_1.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameP1234_1010_1.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences11357451
Sequences flagged as poor quality0
Sequence length123
%GC48

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GTCTACGGCCATACCACCCTGAACGCGCCCGATCTCGTCTGATCTCGGAA4757154.188571889942558No Hit
CGACTCTTAGCGGTGGATCACTCGGCTCGTGCGTCGATGAAGAACGCAGC753640.6635643860581041No Hit
CGCGACCTCAGATCAGACGTGGCGACCCGCTGAATTTAAGCATATTAGTC297440.2618897497334569No Hit
GACTCTTAGCGGTGGATCACTCGGCTCGTGCGTCGATGAAGAACGCAGCT238960.2103993228762334No Hit
CCGGTTCACCCCTCCTTAGGCAACCTGGTGGTCCCCCGCTCCCGGGAGGT234960.2068774058545355No Hit
GTAGCCCCGGGAGGAACCCGGGGCCGCAAGTGCGTTCGAAGTGTCGATGA180290.15874160496047923No Hit
GCGACCTCAGATCAGACGTGGCGACCCGCTGAATTTAAGCATATTAGTCA154090.1356730484683579No Hit
GCCGGGCGCGGTGGCGCGTGCCTGTAGTCCCAGCTACTCGGGAGGCTGAG150350.13238005605307038No Hit
GAGCACACGTCTGAACTCCAGTCACTCCGCGAAATCTCGTATGCCGTCTT132840.11696286429058775TruSeq Adapter, Index 6 (96% over 28bp)
TCTACGGCCATACCACCCTGAACGCGCCCGATCTCGTCTGATCTCGGAAG130050.11450632716795345No Hit
CGGCGGGGGACCGTCCCCCGACCGGCGACCGGCCGCCGCCGGGCGCATTT123450.10869516408215188No Hit
GATCGATGATGACTTCCATATATACATTCCTTGGAAAGCTGAACAAAATG121200.10671408575744681No Hit
TACCTGGTTGATCCTGCCAGTAGCATATGCTTGTCTCAAAGATTAAGCCA114290.10062997410246366No Hit

[FAIL]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TCTACGG684900.0110.521262
CTACGGC685200.0110.430253
TACGGCC690100.0109.41764
GTCTACG697200.0109.18311
CGGCCAT693950.0108.190326
ACGGCCA699500.0107.5375445
GCCATAC702400.0106.202188
GGCCATA715800.0105.0332957
CCATACC720250.0103.60269
GATCGAT92900.093.629791
ATCGATG99950.086.733352
CGGTTCA46500.076.129812
TGGTCCG36350.071.674644
CGATGAT134900.068.549464
GCGACCT133300.067.531682
CGACTCT182350.066.473331
GTAGCCC51500.065.902811
GTGCTCG29300.064.5970151
GTTCACG24000.062.5542682
TTAGCGG194600.060.8139157