Basic Statistics
Measure | Value |
---|---|
Filename | P1234_1021_1.fastq.gz |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 28300555 |
Sequences flagged as poor quality | 0 |
Sequence length | 123 |
%GC | 46 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
GTCTACGGCCATACCACCCTGAACGCGCCCGATCTCGTCTGATCTCGGAA | 468106 | 1.6540523675242411 | No Hit |
CGACTCTTAGCGGTGGATCACTCGGCTCGTGCGTCGATGAAGAACGCAGC | 127103 | 0.4491184006815414 | No Hit |
GACTCTTAGCGGTGGATCACTCGGCTCGTGCGTCGATGAAGAACGCAGCT | 49072 | 0.1733958927660606 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
GTCTACG | 66175 | 0.0 | 111.75787 | 1 |
TCTACGG | 68955 | 0.0 | 106.85405 | 2 |
TACGGCC | 69095 | 0.0 | 105.11572 | 4 |
CTACGGC | 69970 | 0.0 | 105.07858 | 3 |
CGGCCAT | 70075 | 0.0 | 103.33176 | 6 |
ACGGCCA | 71380 | 0.0 | 101.47982 | 5 |
GCCATAC | 73645 | 0.0 | 97.62864 | 8 |
GGCCATA | 77015 | 0.0 | 94.19341 | 7 |
CCATACC | 77795 | 0.0 | 92.09023 | 9 |
CGACTCT | 27840 | 0.0 | 67.83829 | 1 |
TCACGAC | 6020 | 0.0 | 59.290222 | 4 |
TTCACGA | 6230 | 0.0 | 57.666744 | 3 |
CTTAGCG | 32495 | 0.0 | 57.595863 | 6 |
TTAGCGG | 32700 | 0.0 | 57.376892 | 7 |
TAGCGGT | 33085 | 0.0 | 56.49585 | 8 |
AGCGGTG | 33030 | 0.0 | 56.430767 | 9 |
GTTCACG | 6555 | 0.0 | 53.91642 | 2 |
CACGACG | 11595 | 0.0 | 53.70625 | 1 |
CGCGAAT | 6945 | 0.0 | 53.131462 | 106-107 |
GCGACCT | 10430 | 0.0 | 52.14393 | 2 |