FastQCFastQC Report
Thu 23 Jun 2016
P1234_1016_1.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameP1234_1016_1.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences28242306
Sequences flagged as poor quality0
Sequence length123
%GC46

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GTCTACGGCCATACCACCCTGAACGCGCCCGATCTCGTCTGATCTCGGAA2377740.8419071728774554No Hit
CGACTCTTAGCGGTGGATCACTCGGCTCGTGCGTCGATGAAGAACGCAGC510190.1806474301354854No Hit

[FAIL]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GTCTACG358400.0110.249461
TCTACGG372000.0105.8890462
TACGGCC377500.0103.433294
CTACGGC382350.0102.961583
CGGCCAT387100.0100.394126
ACGGCCA407050.095.622445
GCCATAC414800.093.080728
GGCCATA454850.085.850597
CCATACC453750.084.717339
CACGACG105700.054.8248561
TATCGCG47900.051.710396106-107
CGCGTAT49100.051.484806110-111
CGCGAAT62500.051.276913110-111
TCGCGTA49150.050.700016108-109
GTCGTAT103800.050.323086110-111
AGTCGCG63800.050.13701106-107
ATCGCGT50550.049.29586108-109
ACGCCGT60750.048.612595110-111
CGTATCG50200.048.583176104-105
ATCCCGT120250.047.722004108-109