Basic Statistics
Measure | Value |
---|---|
Filename | P1234_1012_1.fastq.gz |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 26629350 |
Sequences flagged as poor quality | 0 |
Sequence length | 123 |
%GC | 50 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
GTCTACGGCCATACCACCCTGAACGCGCCCGATCTCGTCTGATCTCGGAA | 281288 | 1.056308171247139 | No Hit |
CGACTCTTAGCGGTGGATCACTCGGCTCGTGCGTCGATGAAGAACGCAGC | 128085 | 0.48099183795323586 | No Hit |
GACTCTTAGCGGTGGATCACTCGGCTCGTGCGTCGATGAAGAACGCAGCT | 44646 | 0.1676571151755488 | No Hit |
AGGGAGGACAGAAACCTCCCGTGGAGCAGAAGGGCAAAAGCTCGCTTGAT | 43076 | 0.16176136480988082 | No Hit |
AAGGCGAGCTCAGGGAGGACAGAAACCTCCCGTGGAGCAGAAGGGCAAAA | 43033 | 0.1615998888444517 | No Hit |
GGTTTAGTGAGGCCCTCGGATCGGCCCCGCCGGGGTCGGCCCACGGCCCT | 33338 | 0.12519269152269957 | No Hit |
ATACCACCCTGAACGCGCCCGATCTCGTCTGATCTCGGAAGCTAAGCAGG | 29883 | 0.11221828546322009 | No Hit |
GGATCGGCCCCGCCGGGGTCGGCCCACGGCCCTGGCGGAGCGCTGAGAAG | 28249 | 0.10608219877691345 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
GTCTACG | 38235 | 0.0 | 110.41577 | 1 |
TCTACGG | 39445 | 0.0 | 106.62884 | 2 |
TACGGCC | 40145 | 0.0 | 104.0129 | 4 |
CTACGGC | 40455 | 0.0 | 103.89455 | 3 |
CGGCCAT | 41925 | 0.0 | 99.24329 | 6 |
ACGGCCA | 43990 | 0.0 | 94.66885 | 5 |
GCCATAC | 43705 | 0.0 | 94.47555 | 8 |
GGCCATA | 46575 | 0.0 | 89.42157 | 7 |
CCATACC | 48635 | 0.0 | 84.7667 | 9 |
CTTAGCG | 30270 | 0.0 | 60.169304 | 6 |
TTAGCGG | 30445 | 0.0 | 59.592426 | 7 |
AGCGGTG | 31755 | 0.0 | 56.54371 | 9 |
TAGCGGT | 34070 | 0.0 | 53.06169 | 8 |
TCGCGTA | 4065 | 0.0 | 53.057312 | 108-109 |
CGCGTAT | 4320 | 0.0 | 51.451797 | 110-111 |
CACGACG | 8070 | 0.0 | 50.888065 | 1 |
AATCGCG | 4405 | 0.0 | 49.233807 | 106-107 |
TCTTAGC | 37290 | 0.0 | 49.14221 | 5 |
TTCACGA | 3765 | 0.0 | 49.02936 | 3 |
CGAGCTC | 13605 | 0.0 | 48.647877 | 5 |