Basic Statistics
Measure | Value |
---|---|
Filename | P1234_1012_2.fastq.gz |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 26629350 |
Sequences flagged as poor quality | 0 |
Sequence length | 123 |
%GC | 51 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
TCTAGATAGTCAAGTTCGACCGTCTTCTCAGCGCTCCGCCAGGGCCGTGG | 112365 | 0.42195922919635664 | No Hit |
TGGTAACTTTTCTGACACCTCCTGCTTAAAACCCAAAAGGTCAGAAGGAT | 59530 | 0.22355033074408498 | No Hit |
TACTAACCAGGCCCGACCCTGCTTAGCTTCCGAGATCAGACGAGATCGGG | 46993 | 0.1764706986839709 | No Hit |
ATCCAAGTACTAACCAGGCCCGACCCTGCTTAGCTTCCGAGATCAGACGA | 43974 | 0.1651335838088425 | No Hit |
GTGGTAACTTTTCTGACACCTCCTGCTTAAAACCCAAAAGGTCAGAAGGA | 37116 | 0.13938004495040246 | No Hit |
TCCTGCAATTCACATTAATTCTCGCAGCTAGCTGCGTTCTTCATCGACGC | 36135 | 0.13569613978561249 | No Hit |
CTGCAATTCACATTAATTCTCGCAGCTAGCTGCGTTCTTCATCGACGCAC | 35434 | 0.1330637060236168 | No Hit |
ACTTCCTCTAGATAGTCAAGTTCGACCGTCTTCTCAGCGCTCCGCCAGGG | 31058 | 0.1166307100999461 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
GTTATCG | 4785 | 0.0 | 58.335358 | 3 |
TTATCGG | 5245 | 0.0 | 54.222004 | 4 |
CGGAATT | 5270 | 0.0 | 53.286434 | 8 |
CGTTATC | 4840 | 0.0 | 51.886204 | 2 |
TCGGAAT | 5615 | 0.0 | 50.845535 | 7 |
GATAGTC | 40455 | 0.0 | 50.177277 | 5 |
TTACCCG | 6965 | 0.0 | 48.217667 | 6 |
TCGTTAT | 4825 | 0.0 | 47.56473 | 1 |
CGACCTG | 10245 | 0.0 | 46.654778 | 8 |
TACCCGC | 7325 | 0.0 | 45.84448 | 7 |
AGATAGT | 44525 | 0.0 | 45.723064 | 4 |
CTAGATA | 40485 | 0.0 | 45.720154 | 2 |
CGGACTA | 1950 | 0.0 | 45.629833 | 2 |
ATAGTCA | 45310 | 0.0 | 45.37568 | 6 |
TAGATAG | 44675 | 0.0 | 44.941914 | 3 |
TAGTCAA | 46680 | 0.0 | 43.890255 | 7 |
GCGTACG | 2665 | 0.0 | 43.71718 | 1 |
TTCCGAC | 11460 | 0.0 | 42.533916 | 5 |
CCCGGTA | 5380 | 0.0 | 42.300312 | 9 |
GTCGTTT | 3530 | 0.0 | 42.292343 | 1 |