Basic Statistics
Measure | Value |
---|---|
Filename | P1234_1011_1.fastq.gz |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 27988897 |
Sequences flagged as poor quality | 0 |
Sequence length | 123 |
%GC | 49 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
GTCTACGGCCATACCACCCTGAACGCGCCCGATCTCGTCTGATCTCGGAA | 279788 | 0.9996392498068073 | No Hit |
CGACTCTTAGCGGTGGATCACTCGGCTCGTGCGTCGATGAAGAACGCAGC | 132235 | 0.4724552025040501 | No Hit |
GACTCTTAGCGGTGGATCACTCGGCTCGTGCGTCGATGAAGAACGCAGCT | 45778 | 0.16355771361765345 | No Hit |
AAGGCGAGCTCAGGGAGGACAGAAACCTCCCGTGGAGCAGAAGGGCAAAA | 43821 | 0.15656565530252942 | No Hit |
AGGGAGGACAGAAACCTCCCGTGGAGCAGAAGGGCAAAAGCTCGCTTGAT | 37748 | 0.13486776560005206 | No Hit |
GGTTTAGTGAGGCCCTCGGATCGGCCCCGCCGGGGTCGGCCCACGGCCCT | 32826 | 0.11728222087494194 | No Hit |
ATACCACCCTGAACGCGCCCGATCTCGTCTGATCTCGGAAGCTAAGCAGG | 28861 | 0.10311588913275145 | No Hit |
GGATCGGCCCCGCCGGGGTCGGCCCACGGCCCTGGCGGAGCGCTGAGAAG | 28809 | 0.10293010117547684 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
GTCTACG | 38020 | 0.0 | 109.87183 | 1 |
TCTACGG | 39525 | 0.0 | 105.51088 | 2 |
TACGGCC | 39870 | 0.0 | 103.87995 | 4 |
CTACGGC | 40110 | 0.0 | 103.82638 | 3 |
CGGCCAT | 41670 | 0.0 | 99.07756 | 6 |
ACGGCCA | 43860 | 0.0 | 94.21507 | 5 |
GCCATAC | 43995 | 0.0 | 93.53458 | 8 |
GGCCATA | 46560 | 0.0 | 88.784615 | 7 |
CCATACC | 49140 | 0.0 | 83.42049 | 9 |
CTTAGCG | 31665 | 0.0 | 59.730976 | 6 |
TTAGCGG | 31610 | 0.0 | 59.428265 | 7 |
AGCGGTG | 32580 | 0.0 | 56.725708 | 9 |
CACGACG | 8055 | 0.0 | 54.391056 | 1 |
TCGCGTA | 4485 | 0.0 | 53.16284 | 108-109 |
GCGAGCT | 13625 | 0.0 | 52.3493 | 4 |
TAGCGGT | 35815 | 0.0 | 52.0749 | 8 |
CGCGTAT | 4705 | 0.0 | 51.569542 | 110-111 |
TCTTAGC | 38935 | 0.0 | 48.895416 | 5 |
ACGCCGT | 5685 | 0.0 | 48.42314 | 110-111 |
TAGTCGA | 5405 | 0.0 | 48.270298 | 108-109 |