FastQCFastQC Report
Thu 23 Jun 2016
P1234_1006_1.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameP1234_1006_1.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences30839171
Sequences flagged as poor quality0
Sequence length123
%GC52

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GTCTACGGCCATACCACCCTGAACGCGCCCGATCTCGTCTGATCTCGGAA4680851.517826143899912No Hit
CGACTCTTAGCGGTGGATCACTCGGCTCGTGCGTCGATGAAGAACGCAGC2463190.7987212107614695No Hit
CGCGACCTCAGATCAGACGTGGCGACCCGCTGAATTTAAGCATATTAGTC1056500.3425837873527794No Hit
GCCGGGCGCGGTGGCGCGTGCCTGTAGTCCCAGCTACTCGGGAGGCTGAG1021200.3311373058633775No Hit
CGGGGGGCCGGCGGCGGCGGCGACTCTGGACGCGAGCCGGGCCCTTCCCG876560.28423591542068366No Hit
GACTCTTAGCGGTGGATCACTCGGCTCGTGCGTCGATGAAGAACGCAGCT806380.2614791428731985No Hit
GCGACCTCAGATCAGACGTGGCGACCCGCTGAATTTAAGCATATTAGTCA638410.20701269823368468No Hit
GGGGGGCCGGCGGCGGCGGCGACTCTGGACGCGAGCCGGGCCCTTCCCGT574290.18622095905236882No Hit
CGGCGGGGGACCGTCCCCCGACCGGCGACCGGCCGCCGCCGGGCGCATTT554000.17964166416795058No Hit
GTAGCCCCGGGAGGAACCCGGGGCCGCAAGTGCGTTCGAAGTGTCGATGA516630.16752395840990666No Hit
GGAGCAGAAGGGCAAAAGCTCGCTTGATCTTGATTTTCAGTACGAATACA510670.1655913513369085No Hit
GGTTTAGTGAGGCCCTCGGATCGGCCCCGCCGGGGTCGGCCCACGGCCCT505130.163794934695229No Hit
CGGCCGGGCGCGACCCGCTCCGGGGACAGTGCCAGGTGGGGAGTTTGACT495950.16081820098212107No Hit
CAGGGAGGACAGAAACCTCCCGTGGAGCAGAAGGGCAAAAGCTCGCTTGA440260.1427599983151298No Hit
CCCGCGGACGCTACGCCGCGACGAGTAGGAGGGCCGCTGCGGTGAGCCTT432860.14036045262046765No Hit
GGGACCGGGGTCCGGTGCGGAGTGCCCTTCGTCCTGGGAAACGGGGCGCG415910.13486419592796448No Hit
CGGCGGCGGCGGCGACTCTGGACGCGAGCCGGGCCCTTCCCGTGGATCGC392800.12737047957612088No Hit
GAGGGGCTCTCGCTTCTGGCGCCAAGCGCCCGGCCGCGCGCCGGCCGGGC357850.11603749011281789No Hit
GGGCAAAAGCTCGCTTGATCTTGATTTTCAGTACGAATACAGACCGTGAA345730.11210742338047934No Hit
CGGGACCGGGGTCCGGTGCGGAGTGCCCTTCGTCCTGGGAAACGGGGCGC339740.11016508841952982No Hit
TCTGGGCTGTAGTGCGCTATGCCGATCGGGTGTCCGCACTAAGTTCGGCA330010.1070100100939808No Hit
CGTACGACTCTTAGCGGTGGATCACTCGGCTCGTGCGTCGATGAAGAACG315450.10228874180826715No Hit

[FAIL]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GTCTACG554450.0109.309181
TCTACGG571700.0105.9190142
TACGGCC588450.0102.715634
CTACGGC596050.0101.680193
CGGCCAT600700.0100.3540046
ACGGCCA626550.096.357225
GCCATAC633800.094.66628
GGCCATA646650.093.383927
CCATACC676250.088.395539
GCGCGGT184600.070.1214146
CTTAGCG504050.061.74526
TTAGCGG520450.059.607677
CGCGGTG234100.055.5179527
ACTCTTA575850.054.4443933
GACTCTT587450.053.5284162
AGCGGTG578600.053.4236569
CACGACG90050.050.144891
CTCTTAG628650.049.89034
TCTTAGC627400.049.831175
GTAGCCC135250.049.194591