FastQCFastQC Report
Thu 23 Jun 2016
P1234_1015_1.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameP1234_1015_1.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences13216614
Sequences flagged as poor quality0
Sequence length123
%GC46

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GTCTACGGCCATACCACCCTGAACGCGCCCGATCTCGTCTGATCTCGGAA1063050.8043285519271427No Hit
CGACTCTTAGCGGTGGATCACTCGGCTCGTGCGTCGATGAAGAACGCAGC236060.1786085301424404No Hit
CGCGACCTCAGATCAGACGTGGCGACCCGCTGAATTTAAGCATATTAGTC142130.1075388900666994No Hit

[FAIL]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GTCTACG160500.0109.336561
TCTACGG167850.0104.305192
TACGGCC171900.0101.168074
CTACGGC173100.0100.905463
CGGCCAT177500.097.970736
ACGGCCA184200.094.348415
GCCATAC188800.091.359978
GGCCATA204450.085.141277
CCATACC209200.081.836819
TCACGAC23650.054.3415574
CACGACG49650.053.7696841
CGCGTAT20550.050.871223110-111
TTCACGA26400.049.787363
AATCGCG21000.049.352154106-107
ACGCCGT25600.048.675667110-111
TCGCGTA21150.048.152576108-109
ATCGCGT21600.047.565422108-109
GTTCACG27150.047.5513652
TCGGACG35900.047.3918106-107
ATCCCGT55450.047.212917108-109