Basic Statistics
Measure | Value |
---|---|
Filename | P1234_1009_2.fastq.gz |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 20462961 |
Sequences flagged as poor quality | 0 |
Sequence length | 123 |
%GC | 46 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
ATCCAAGTACTAACCAGGCCCGACCCTGCTTAGCTTCCGAGATCAGACGA | 99554 | 0.4865082819636904 | No Hit |
TACTAACCAGGCCCGACCCTGCTTAGCTTCCGAGATCAGACGAGATCGGG | 99413 | 0.4858192321238359 | No Hit |
GTACTAACCAGGCCCGACCCTGCTTAGCTTCCGAGATCAGACGAGATCGG | 48045 | 0.23479006777171693 | No Hit |
CATCCAAGTACTAACCAGGCCCGACCCTGCTTAGCTTCCGAGATCAGACG | 42200 | 0.20622626412668235 | No Hit |
ACTAACCAGGCCCGACCCTGCTTAGCTTCCGAGATCAGACGAGATCGGGC | 41254 | 0.20160327725787094 | No Hit |
TCTAGATAGTCAAGTTCGACCGTCTTCTCAGCGCTCCGCCAGGGCCGTGG | 34856 | 0.1703370299146834 | No Hit |
CCATCCAAGTACTAACCAGGCCCGACCCTGCTTAGCTTCCGAGATCAGAC | 30136 | 0.14727096435359477 | No Hit |
TCCTGCAATTCACATTAATTCTCGCAGCTAGCTGCGTTCTTCATCGACGC | 28115 | 0.13739458331567947 | No Hit |
GTCCAAGTACTAACCAGGCCCGACCCTGCTTAGCTTCCGAGATCAGACGA | 26295 | 0.1285004648154292 | No Hit |
CCGTTTCCGACCTGGGCCGGTTCACCCCTCCTTAGGCAACCTGGTGGTCC | 24083 | 0.11769069002281732 | No Hit |
TGCTAACCAGGCCCGACCCTGCTTAGCTTCCGAGATCAGACGAGATCGGG | 24076 | 0.11765648187473943 | No Hit |
CCAAGTACTAACCAGGCCCGACCCTGCTTAGCTTCCGAGATCAGACGAGA | 23990 | 0.11723621034121112 | No Hit |
CTGCAATTCACATTAATTCTCGCAGCTAGCTGCGTTCTTCATCGACGCAC | 23565 | 0.1151592870650538 | No Hit |
GCCGCAAGTGCGTTCGAAGTGTCGATGATCAATGTGTCCTGCAATTCACA | 22448 | 0.1097006440074826 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
TTCGACG | 2525 | 0.0 | 57.26719 | 1 |
TCGACGA | 3020 | 0.0 | 48.261055 | 2 |
GTTATCG | 2980 | 0.0 | 47.519024 | 3 |
CGCCCAA | 3010 | 0.0 | 47.456272 | 1 |
CCAACGT | 7415 | 0.0 | 45.928288 | 3 |
CCCGGTA | 7090 | 0.0 | 44.97123 | 9 |
ACCGTCC | 12130 | 0.0 | 44.903122 | 7 |
CAACGTG | 7855 | 0.0 | 44.696606 | 4 |
CCCAACG | 6700 | 0.0 | 44.555344 | 2 |
TCGTCCG | 2675 | 0.0 | 41.999775 | 4 |
CGTTATC | 3340 | 0.0 | 41.884743 | 2 |
CCACCGT | 13440 | 0.0 | 41.40359 | 5 |
CACCGTC | 13345 | 0.0 | 41.386646 | 6 |
CAAGTAC | 59655 | 0.0 | 41.217216 | 4 |
CCGTCCT | 13335 | 0.0 | 40.80204 | 8 |
TTATCGG | 3445 | 0.0 | 40.76538 | 4 |
CGAGGAT | 4675 | 0.0 | 40.172626 | 6 |
ACCCGGT | 7990 | 0.0 | 40.052765 | 8 |
CGTCCTG | 13740 | 0.0 | 39.854156 | 9 |
AACGTGG | 8875 | 0.0 | 39.756275 | 5 |