FastQCFastQC Report
Thu 23 Jun 2016
P1234_1011_2.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameP1234_1011_2.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences27988897
Sequences flagged as poor quality0
Sequence length123
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TCTAGATAGTCAAGTTCGACCGTCTTCTCAGCGCTCCGCCAGGGCCGTGG1120410.40030516386551424No Hit
TGGTAACTTTTCTGACACCTCCTGCTTAAAACCCAAAAGGTCAGAAGGAT557070.19903249492111103No Hit
TACTAACCAGGCCCGACCCTGCTTAGCTTCCGAGATCAGACGAGATCGGG478320.17089633793000134No Hit
ATCCAAGTACTAACCAGGCCCGACCCTGCTTAGCTTCCGAGATCAGACGA423880.1514457679414805No Hit
TCCTGCAATTCACATTAATTCTCGCAGCTAGCTGCGTTCTTCATCGACGC364680.1302945235748304No Hit
CTGCAATTCACATTAATTCTCGCAGCTAGCTGCGTTCTTCATCGACGCAC358340.1280293396342128No Hit
GTGGTAACTTTTCTGACACCTCCTGCTTAAAACCCAAAAGGTCAGAAGGA348580.1245422425899813No Hit
ACTTCCTCTAGATAGTCAAGTTCGACCGTCTTCTCAGCGCTCCGCCAGGG308440.1102008414265128No Hit

[FAIL]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GTTATCG51200.057.9461943
CGTTATC50650.052.1227952
TTATCGG57800.051.6327634
CGGAATT57250.051.1978878
TCGGAAT59500.049.8512657
GATAGTC408750.049.6763045
CGACCTG103700.048.575168
TCGTTAT51750.046.2709121
AGATAGT448750.045.522744
ATAGTCA455100.044.8676
TTACCCG74600.044.860666
CTAGATA413250.044.761522
TAGATAG451400.044.4910473
TTCCGAC116750.044.206825
TTTCCGA117150.043.856634
TACCCGC76900.043.060127
TGTACGA16850.042.7302862
TAGTCAA477550.042.681977
CCCGGTA50250.042.611459
CCGACCT120150.042.41117