FastQCFastQC Report
Thu 23 Jun 2016
P1234_1022_1.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameP1234_1022_1.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences101
Sequences flagged as poor quality0
Sequence length123
%GC50

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CCCGAGGGGCTCTCGCTTCTGGCGCCAAGCGCCCGGCCGCGCGCCGGCCG21.9801980198019802No Hit
GTCTACGGCCATACCACCCTGAACGCGCCCGATCTCGTCTGATCTCGGAA21.9801980198019802No Hit
TAGAACTTCAGTTTATAGAGCTTCAGAAAATAAAATAGTTTTAATTTCAA10.9900990099009901No Hit
GAATCGGCCCAGGTCGGAAACGGAGCAGGTCAAAATTCCCGTGCTGATCA10.9900990099009901No Hit
GATGCTCCACTGTGCTTGCCAAGATGAAGTGCGTCTTGGTGGCCACTGAG10.9900990099009901No Hit
TATTCAATGTGGACTGTTAGGCACAGCACCAGGTACGGGGTATGAGCAAG10.9900990099009901No Hit
GGCACTGAATCGAATCAGTTAGTTCAGTTTGAGACAATCAATTTGATCTC10.9900990099009901No Hit
TTCCCTAAACAAAGAGGAAGAGACATCAAAAGTGAGCGCACATGACAAAG10.9900990099009901No Hit
TTAAAGAGAGGAAATATTTCATAGCCTAATCCCAATTTTAAAGGTAATGC10.9900990099009901No Hit
GTGGGGTTCGAGGCGGTTTGAGTGAGACGAGACGAGACGCGCCCCTCCCA10.9900990099009901No Hit
GGGAAAGGTTTGCCTATGGAACGAAAACAGTCCTCCTTCCATGATTTCCC10.9900990099009901No Hit
GGTTTCGGGATGGGAAAGAGAAGGTTCTCATAACAACTAATGTTTGCGCC10.9900990099009901No Hit
GGGGGGACCGGCGGCGGCGGCGACTCTGGACGCGAGCCGGGCCCTTCCCG10.9900990099009901No Hit
GTCGGCGGGGGACCGTCCCCCGACCGGCGACCGGCCGCCGCCGGGCGCAT10.9900990099009901No Hit
ATCACCCACCATCCAGGACTTCCCCAGAGCCCTGTTTCCTTGGGTGCAGG10.9900990099009901No Hit
AAGCACGTGAGGGTGCCCCCCACCCACATGTGGGTCTGTGTGTGTGCACG10.9900990099009901No Hit
GGCCGCGCGCCGGCCGGGCGCGACCCGCTCCGGGGACAGTGCCAGGTGGG10.9900990099009901No Hit
CAACCTGTGGTTTGAACTTGCTCTCTGAATTTGTTGCATTCTTGAAGAGC10.9900990099009901No Hit
GGCGACTCTGGACGCGAGCCGGGCCCTTCCCGTGGATCCCCCCAGCTGCG10.9900990099009901No Hit
ACCATGGACAGACCCTGGAAACTCTGGGCGGCAAAAAACTGAGAGTTTTT10.9900990099009901No Hit
AATTTTTAGGAAGGAAGGAAAGAAGGAAGAAAGGAAGGACAGATGGACAG10.9900990099009901No Hit
AGATATGTCAACATACTTTCTGTGGCTCTGGCACAGGGAGGAGAGTCACA10.9900990099009901No Hit
ACGACGCTCTTCCGATCTGGGCGGCTTTGGTGACTCTAGATAACCTCGGG10.9900990099009901No Hit
GGCTTGGGTGCGTTCAAGATTCAGCTTCACCCGTAACCCACCGCCATGGC10.9900990099009901No Hit
CTGGGGAGGGAGGCAGAGCCTTGTGGACCCTGGTTAAGATTCTGATCATT10.9900990099009901No Hit
GGCTCCACGAGGGTTCAGCTGTCTCTTACTTTTAACCAGTGAAATTGACC10.9900990099009901No Hit
ATGGCTAAGATCTCATCTTCCTTAATGGGTAGGTCATATAATGCCTAAAA10.9900990099009901No Hit
GATACAATACTTAAGTATCTTATGCATTTGTTACTTTTATCTCATGCATT10.9900990099009901No Hit
CGTGACCTCATCAGACGTGGCGACCCGCTGAATTTAAGCATATTAGTCAG10.9900990099009901No Hit
ATTTTTCTGCAGAGCCTTTGTACTCAGGGACCAGGGTTAATTCATGAGTC10.9900990099009901No Hit
AGGGCGGGATCCGGCTCTGGTGTTTTGAGGAGGGGGTGTGGTGTAGGGAA10.9900990099009901No Hit
GTCTACGGCCATACCACCCTGAACGCCCGATCTCGTCTGATCTCGGAAGC10.9900990099009901No Hit
GTCACGGTGAGAGGCAGATCGGAAGAGCACACGTCTGAACTCCAGTCAGA10.9900990099009901TruSeq Adapter, Index 1 (97% over 34bp)
AACGGGGCTCCGCGCGAGGTCAGACTGGGCAGGAGATGCCGTGGACCCCG10.9900990099009901No Hit
AGTTCAACCCATAATAACAATAATGATCATTTTTTCAGTTTGAACGTACT10.9900990099009901No Hit
ACAAATCAGAAAATTCCTGCTTTATAATCTTACAGGGCAAGGCAAGTGAT10.9900990099009901No Hit
TCTTGTTGCCTGTGAACTGATACTTTGCCTTGGAAACTCAGATAGTAAAA10.9900990099009901No Hit
AGAGTTGGCTTGCATTTTAGGGGCCATTTTGTATAAAAAGTGCATATGAT10.9900990099009901No Hit
GATACCACAGCTAGGAATAATGGAATAGGACCGCGGTTCTATTTTGTTGG10.9900990099009901No Hit
TGTTGCTTTTGTATGTTTCCTGTTTTTTCATCTTTAAAGGAAATTCCACC10.9900990099009901No Hit
CCTTCTGACCTTTTGGGTTTTAAGCAGGAGGTGTCAGAAAAGTTACCACA10.9900990099009901No Hit
CCCGCCCCCAGTTTGACTACTCTGACCATCAGCCCTCAGGACCCTATTAT10.9900990099009901No Hit
GGGCTTGGCGGAATCAGCGGGGAAAGAAGACCCTGTTGAGCTTGACTCTA10.9900990099009901No Hit
GCCACTTACATTGTGTTGATTTCTTCTTTACGTAAATATTCTTTTACCTT10.9900990099009901No Hit
CTCCAGTCCGCGAGGGCGCACCACCGGCCCGTCTCGCCCGCCGCGCTGGG10.9900990099009901No Hit
TGGCGCTAAACCATTCGTAGACGACCTGCTTCTGGGTCGGGGTTTCGTAC10.9900990099009901No Hit
CACCAGGAGTGGAGCCTGCGGCTTAATTTGACCCAACACGGGAAACCTCA10.9900990099009901No Hit
GTCTGTCCGTGGGGCCTGCAGTGTGTGAGAATGCAGTGTGTGCTTGGAGG10.9900990099009901No Hit
GGAAGGGCACCACCAGGAGTGGAGCCTGCGGCTTAATTTGACCCAACACG10.9900990099009901No Hit
GGGACATGGGCAGATTTACCTTTAGGTTTGTCTGGAAAAAATGCGCATCA10.9900990099009901No Hit
TGGCTAAACAACAACTTGCCTTCTGCAAAAGTTAATGGGTAAAACAGGCC10.9900990099009901No Hit
CTAATTGACATGGAAAGGCAGGGGGATGTCTATAGACAGGGGACAACCCC10.9900990099009901No Hit
GAGATTGTGCCTGCCACCCTACGCCGTAGCCGTCCAGAGACTGGCAGGCC10.9900990099009901No Hit
TACTGATTGAGCCTGGGAGTCAAAGGTTGCAGTAAGCTGAGATCATGTGA10.9900990099009901No Hit
GGGTTTCACCGGGTTAGCCAGGATGGTCTCGATCTCCTGACCTCGTGATC10.9900990099009901No Hit
CGCTTCTGGCGCCAAGCGCCCGGCCGCGCCGGCCGGGCGCGCCCCGCTCC10.9900990099009901No Hit
GGGGCGAGGTAGATCGGAAGAGCATACGTCTGAACTCCAGTACTAATGCG10.9900990099009901Illumina Multiplexing PCR Primer 2.01 (96% over 31bp)
GGAGGTGGCAAGCGCGGCTGCGCCTGCTCAGGTGAGAGCCTGGGCCGGAC10.9900990099009901No Hit
GAACAGGAAGAGGCAGCTGGTGTTCTGCAAAACTTGGACAGGGGCAAAGT10.9900990099009901No Hit
CTTGGGAGGCTGAGGCATGAGAATTGTTTGAACCAGGACCCGGGAGGCGG10.9900990099009901No Hit
CAATCGCCTCTCTCCAGTAAAAGGAAAGCACTAGAAGAGTCTGAGAGCTC10.9900990099009901No Hit
CCCGAAACCTTGCTGCATGGAAAATTAGCATTCCATATGTAGACTTTTTT10.9900990099009901No Hit
GGAAGGGAAAGGCAGATTTTATTTACTTTTATACACATTTTCTCAGATGG10.9900990099009901No Hit
CCAGGCGTTGGCAGCAGGGTTAGAACAGCTGCCTGAGGCTCCTCCCTGAA10.9900990099009901No Hit
CGGCCTGCTGCCAGTTCCGGGGGGCCTCAAAGGAAGGACTTACATTTTTA10.9900990099009901No Hit
CCCCACCCAGCAGCTGATTCAAGATATCAAGGAGAACTGCCTGAACTCGG10.9900990099009901No Hit
ACACAATCAAGCATGAAACAAAACACGACTCTCTAAGATACAGGACCTGT10.9900990099009901No Hit
TCAGGGATCATTTCTATAGTGTGTTACTAGAGAAGTTTCTCTGAACGTGT10.9900990099009901No Hit
TGCTTTGAAAAGACTTATTCTGGATCACCTGAGGTCAGGAGTTTGAGACC10.9900990099009901No Hit
GAAGTCTCCCAGCGGATGCTCCTAGTGTCTCATTAGCTAGAACTGGGTCA10.9900990099009901No Hit
GAGGCGTATTATACCATAGCCGCCTAGTTTTAAGAGTACTGTGGCAAGTA10.9900990099009901No Hit
GAAGGTAGCGTCTTGATCTGCGTGGCGTGGTTCTGTGCCTTGGGAAGATT10.9900990099009901No Hit
GATGAAGAACGCAGCTAGCTGCGAGAATTAATGTGAATTGCAGGACACAT10.9900990099009901No Hit
AAGAAATGTCCCTTCACTGGTAATGTGTCCATTCGAGGGCGGATCCTCTC10.9900990099009901No Hit
GGGCGCGAGTCGAGACCCTGCTCGCTCCTCTCGCTTCTGAAACCGACGTT10.9900990099009901No Hit
AGAGGTCTTGGGGCTGAAACGATCTCAACCTATTCTCAAACTTTAAATGG10.9900990099009901No Hit
TGGAGAGGGAAGCACCCTCTGGGGCACATCTGACTGGGAACTGGTATCAG10.9900990099009901No Hit
CACCAATAAGAAGTAAAACAGATCTTTAAGAATCTGAAGATGATCTTATA10.9900990099009901No Hit
ACTCGGCTCGTGCGTCGATGAAGAACGCAGCTAGCTGCGAGAATTAATGT10.9900990099009901No Hit
TGCCATACAGCTTCTGCGATTCAGGACAACGTCAATGTTCTGGGCCACCA10.9900990099009901No Hit
CAAGGGTGCCATGGTCCCGGGAGAGCCCAAACCTATCACCACCTGTTGGG10.9900990099009901No Hit
TAGTGAGTTGTGTGTACTCTGATGACAAGAAAAATTCAAAATGCCATGAC10.9900990099009901No Hit
CTGTACATATTTCATGATTTCATTTCTGTGACATTCCAGAGAAGGCAAAA10.9900990099009901No Hit
GAGCCTCTGTGTGCCGCTTCTCCCCTCTGTCAAGTCGTGTCTTCTTATAT10.9900990099009901No Hit
GGCATGTCGTCCAACTGCACCAGCACCACGGCGGTGGCGGTGGCGCCGCT10.9900990099009901No Hit
CGGCTACCCACCCGACTCGTCTTGGAACACGGACCAAGGAGTCTAACACG10.9900990099009901No Hit
GTCGGGAGATGGAGACCATCCTGGCTAATGCGGTGAAACCCCATCTCTAC10.9900990099009901No Hit
ATTGCCCGGAAATACAGACCAGGAGCCTGTCTTTGTTCAGTGAGCAACTA10.9900990099009901No Hit
GGCAGGGCGCCCTGGAATGGGTTCGCCCCGAGAGAGGGGCCCGTGCCTTG10.9900990099009901No Hit
CTGCGAGAATTAATGTGAATTGCAGGACACATTGATCATCGACACTTCGA10.9900990099009901No Hit
TCTGAAAAGGTAAAGGAGAATATCTGGATGGAGAGAGAGAGACAGTCTAG10.9900990099009901No Hit
AACACGCCATTGTTATATGCAACAAATGTAAGGAAAGGAAAGATGAAACC10.9900990099009901No Hit
TAGGGCCATGTTAGCGTAGGGGAGGGGAATTAAGGCACAAATGGTTGTTG10.9900990099009901No Hit
CGACTTTTAGCGGTGGATCACTCGGCTCGTGCGTCGATGAAGAACGCAGC10.9900990099009901No Hit
GGGAAGAAGGGAGGGAGAGAGGGAAAATGGAAAGAAGGAAAGGAGGGAAG10.9900990099009901No Hit
GCGTGGGTTAGAGTGTCAGAGGAATAGCTCCTGGAAGGCCAAATTAGCCC10.9900990099009901No Hit
GCTAACACTGAGAAGCAACAATTTGTTTAGATTATCTAGTGATGAACTTT10.9900990099009901No Hit
GGGTTTGTCATAGATAGCTCTTATTATTTTGAGATATGTCCCATCAATAC10.9900990099009901No Hit
GAATCAGGGAAAAAGTCATTTAGCATTACCTCTGGGGAATGGATTTGGGT10.9900990099009901No Hit

[FAIL]Adapter Content

Adapter graph

[OK]Kmer Content

No overrepresented Kmers