FastQCFastQC Report
Thu 23 Jun 2016
P1234_1011_1.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameP1234_1011_1.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences27988897
Sequences flagged as poor quality0
Sequence length123
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GTCTACGGCCATACCACCCTGAACGCGCCCGATCTCGTCTGATCTCGGAA2797880.9996392498068073No Hit
CGACTCTTAGCGGTGGATCACTCGGCTCGTGCGTCGATGAAGAACGCAGC1322350.4724552025040501No Hit
GACTCTTAGCGGTGGATCACTCGGCTCGTGCGTCGATGAAGAACGCAGCT457780.16355771361765345No Hit
AAGGCGAGCTCAGGGAGGACAGAAACCTCCCGTGGAGCAGAAGGGCAAAA438210.15656565530252942No Hit
AGGGAGGACAGAAACCTCCCGTGGAGCAGAAGGGCAAAAGCTCGCTTGAT377480.13486776560005206No Hit
GGTTTAGTGAGGCCCTCGGATCGGCCCCGCCGGGGTCGGCCCACGGCCCT328260.11728222087494194No Hit
ATACCACCCTGAACGCGCCCGATCTCGTCTGATCTCGGAAGCTAAGCAGG288610.10311588913275145No Hit
GGATCGGCCCCGCCGGGGTCGGCCCACGGCCCTGGCGGAGCGCTGAGAAG288090.10293010117547684No Hit

[FAIL]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GTCTACG380200.0109.871831
TCTACGG395250.0105.510882
TACGGCC398700.0103.879954
CTACGGC401100.0103.826383
CGGCCAT416700.099.077566
ACGGCCA438600.094.215075
GCCATAC439950.093.534588
GGCCATA465600.088.7846157
CCATACC491400.083.420499
CTTAGCG316650.059.7309766
TTAGCGG316100.059.4282657
AGCGGTG325800.056.7257089
CACGACG80550.054.3910561
TCGCGTA44850.053.16284108-109
GCGAGCT136250.052.34934
TAGCGGT358150.052.07498
CGCGTAT47050.051.569542110-111
TCTTAGC389350.048.8954165
ACGCCGT56850.048.42314110-111
TAGTCGA54050.048.270298108-109