FastQCFastQC Report
Thu 23 Jun 2016
P1234_1005_1.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameP1234_1005_1.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences33756772
Sequences flagged as poor quality0
Sequence length123
%GC51

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GTCTACGGCCATACCACCCTGAACGCGCCCGATCTCGTCTGATCTCGGAA5420111.6056363446125714No Hit
CGACTCTTAGCGGTGGATCACTCGGCTCGTGCGTCGATGAAGAACGCAGC2879010.8528688702817911No Hit
GCCGGGCGCGGTGGCGCGTGCCTGTAGTCCCAGCTACTCGGGAGGCTGAG1155210.34221577821481275No Hit
CGGGGGGCCGGCGGCGGCGGCGACTCTGGACGCGAGCCGGGCCCTTCCCG972060.2879599980709056No Hit
GACTCTTAGCGGTGGATCACTCGGCTCGTGCGTCGATGAAGAACGCAGCT912670.27036649120360207No Hit
GGAGCAGAAGGGCAAAAGCTCGCTTGATCTTGATTTTCAGTACGAATACA856620.2537624154347459No Hit
CGCGACCTCAGATCAGACGTGGCGACCCGCTGAATTTAAGCATATTAGTC741610.21969221464659003No Hit
CAGGGAGGACAGAAACCTCCCGTGGAGCAGAAGGGCAAAAGCTCGCTTGA712400.2110391360880122No Hit
CGGCGGGGGACCGTCCCCCGACCGGCGACCGGCCGCCGCCGGGCGCATTT694920.20586091584823335No Hit
GGTTTAGTGAGGCCCTCGGATCGGCCCCGCCGGGGTCGGCCCACGGCCCT665670.19719598781542266No Hit
GGGGGGCCGGCGGCGGCGGCGACTCTGGACGCGAGCCGGGCCCTTCCCGT638890.1892627648164937No Hit
GGGCAAAAGCTCGCTTGATCTTGATTTTCAGTACGAATACAGACCGTGAA568020.16826845884434685No Hit
CGGCCGGGCGCGACCCGCTCCGGGGACAGTGCCAGGTGGGGAGTTTGACT552340.16362346494504865No Hit
GTAGCCCCGGGAGGAACCCGGGGCCGCAAGTGCGTTCGAAGTGTCGATGA535210.1585489276048077No Hit
GAGGGGCTCTCGCTTCTGGCGCCAAGCGCCCGGCCGCGCGCCGGCCGGGC504520.14945741849961247No Hit
GCGACCTCAGATCAGACGTGGCGACCCGCTGAATTTAAGCATATTAGTCA440310.13043604998724403No Hit
CGGCGGCGGCGGCGACTCTGGACGCGAGCCGGGCCCTTCCCGTGGATCGC434390.12868232780077432No Hit
GCAGAAGGGCAAAAGCTCGCTTGATCTTGATTTTCAGTACGAATACAGAC409930.1214363743073538No Hit
AGGGAGGACAGAAACCTCCCGTGGAGCAGAAGGGCAAAAGCTCGCTTGAT398530.11805927415097629No Hit
GGGGCTCTCGCTTCTGGCGCCAAGCGCCCGGCCGCGCGCCGGCCGGGCGC389310.11532797034029202No Hit
CAGAAGGGCAAAAGCTCGCTTGATCTTGATTTTCAGTACGAATACAGACC384580.11392677001225117No Hit
CGTACGACTCTTAGCGGTGGATCACTCGGCTCGTGCGTCGATGAAGAACG360630.10683189731530017No Hit
TCTGGGCTGTAGTGCGCTATGCCGATCGGGTGTCCGCACTAAGTTCGGCA358790.1062868215005866No Hit
TACCTGGTTGATCCTGCCAGTAGCATATGCTTGTCTCAAAGATTAAGCCA355910.10543365935581755No Hit
GAGCTCAGGGAGGACAGAAACCTCCCGTGGAGCAGAAGGGCAAAAGCTCG345620.10238538210940312No Hit

[FAIL]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GTCTACG624600.0110.224021
TCTACGG644800.0106.743782
TACGGCC670750.0102.43994
CTACGGC675750.0101.98453
CGGCCAT682150.0100.6689456
ACGGCCA714650.096.056375
GCCATAC718700.094.6670768
GGCCATA730550.094.0540547
CCATACC751150.090.320799
GCGCGGT213500.070.835346
CTTAGCG593000.062.0487066
TTAGCGG610700.060.0103267
CGCGGTG268100.056.77897
GACTCTT669450.055.438232
ACTCTTA678250.054.7361683
AGCGGTG680450.053.6597339
CTCTTAG694500.053.3124474
TAGCGGT689050.053.0578278
TCTTAGC695450.053.0543485
TCGCGTA35600.049.220806108-109