FastQCFastQC Report
Thu 23 Jun 2016
P1234_1002_2.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameP1234_1002_2.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences31080150
Sequences flagged as poor quality0
Sequence length123
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TCTAGATAGTCAAGTTCGACCGTCTTCTCAGCGCTCCGCCAGGGCCGTGG2159430.6947939440446715No Hit
TGGTAACTTTTCTGACACCTCCTGCTTAAAACCCAAAAGGTCAGAAGGAT1038240.3340524418318444No Hit
ACTTCCTCTAGATAGTCAAGTTCGACCGTCTTCTCAGCGCTCCGCCAGGG820100.2638661653820847No Hit
TACTAACCAGGCCCGACCCTGCTTAGCTTCCGAGATCAGACGAGATCGGG818330.2632966700611162No Hit
ATCCAAGTACTAACCAGGCCCGACCCTGCTTAGCTTCCGAGATCAGACGA655780.2109964076749951No Hit
GTGGTAACTTTTCTGACACCTCCTGCTTAAAACCCAAAAGGTCAGAAGGA633600.20386001998059852No Hit
CTGTGGTAACTTTTCTGACACCTCCTGCTTAAAACCCAAAAGGTCAGAAG583700.18780475641205077No Hit
TGTGGTAACTTTTCTGACACCTCCTGCTTAAAACCCAAAAGGTCAGAAGG539920.1737185953092247No Hit
GTACTAACCAGGCCCGACCCTGCTTAGCTTCCGAGATCAGACGAGATCGG528240.16996056968837023No Hit
GTAACTTTTCTGACACCTCCTGCTTAAAACCCAAAAGGTCAGAAGGATCG519680.16720640022651112No Hit
CTTAGGACACCTGCGTTACCGTTTGACAGGTGTACCGCCCCAGTCAAACT516960.16633124357507928No Hit
TACGACTTTTACTTCCTCTAGATAGTCAAGTTCGACCGTCTTCTCAGCGC461040.1483390524177007No Hit
GCTTAAAACCCAAAAGGTCAGAAGGATCGTGAGGCCCCGCTTTCACGGTC458420.1474960706431597No Hit
GGTTTGTTAGGTACTGTTTGCATTAATAAATTAAAGCTCCATAGGGTCTT430950.1386576319612357No Hit
ACTAACCAGGCCCGACCCTGCTTAGCTTCCGAGATCAGACGAGATCGGGC371520.11953610262498734No Hit
CTCTAGATAGTCAAGTTCGACCGTCTTCTCAGCGCTCCGCCAGGGCCGTG369480.11887973513641344No Hit
GGTAACTTTTCTGACACCTCCTGCTTAAAACCCAAAAGGTCAGAAGGATC366920.11805605828800697No Hit
TAGTCAAGTTCGACCGTCTTCTCAGCGCTCCGCCAGGGCCGTGGGCCGAC329520.10602265433081887No Hit

[FAIL]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CGATTAC78900.043.896697
TTATCGA81450.043.1782383
GTTATCG49350.042.5685423
CCGTTAA67150.041.8489461
TAGGTAC137800.041.5222558
TATCGAT87250.040.2407384
GATAGTC831000.037.327045
TAGATAG825200.037.073013
AGATAGT841000.037.0095754
TTTATCG94800.036.492422
CTAGATA777900.036.2624132
CGTTATC54050.036.063852
TTATCGG59750.035.0610734
TAGTCAA886050.034.902467
TGTCCGT199400.034.6525846
GTTAGGT163350.034.5994266
TCTAGAT804000.034.3114051
CGACCTG142000.033.413648
ATCGATT104850.033.3175285
CTGTCCG208150.033.312625