FastQCFastQC Report
Thu 23 Jun 2016
P1234_1017_2.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameP1234_1017_2.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences34064465
Sequences flagged as poor quality0
Sequence length123
%GC46

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TACTAACCAGGCCCGACCCTGCTTAGCTTCCGAGATCAGACGAGATCGGG884160.25955493503273863No Hit
ATCCAAGTACTAACCAGGCCCGACCCTGCTTAGCTTCCGAGATCAGACGA779800.22891890420119618No Hit
GTACTAACCAGGCCCGACCCTGCTTAGCTTCCGAGATCAGACGAGATCGG481050.14121754150549554No Hit
TCTAGATAGTCAAGTTCGACCGTCTTCTCAGCGCTCCGCCAGGGCCGTGG428460.12577916606058542No Hit
CATCCAAGTACTAACCAGGCCCGACCCTGCTTAGCTTCCGAGATCAGACG405300.1189802922194727No Hit
ACTAACCAGGCCCGACCCTGCTTAGCTTCCGAGATCAGACGAGATCGGGC390680.11468842971700863No Hit
TGGTAACTTTTCTGACACCTCCTGCTTAAAACCCAAAAGGTCAGAAGGAT346590.10174532316887994No Hit

[FAIL]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GTCGGTA26100.055.1802061
GTCGCAA29850.053.5435331
GCGTACG24400.053.266221
GTTATCG66850.047.795383
ACCGTCC294950.046.6729057
TTATCGG68000.046.642234
TCGGTAT32000.045.9152452
CACCGTC302650.045.8944366
CCCGGTA58100.045.312919
CGGAATT67800.045.129798
CCGTCCT306800.044.7748378
TCGGAAT70250.044.055557
CGTCCTG311700.043.8639229
CGTTATC69150.042.5803262
CCACCGT333650.041.7061465
TCGCAAG39400.039.520152
CGGACTA24750.039.261432
CGACCTG104900.038.594198
CAAGTAC590650.037.628224
TCGTTAT75950.037.6167071